PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013720-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 157aa MW: 17725 Da PI: 6.0811 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.3 | 6.2e-09 | 59 | 81 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f +tG+C+yGd+Ck+ H++ WALNUT_00013720-RA 59 VCNHFVKTGFCQYGDSCKYFHPK 81 6********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 0.0018 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 9.65E-15 | 4 | 45 | No hit | No description |
Pfam | PF06220 | 4.0E-10 | 5 | 36 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 14.577 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-8 | 55 | 84 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-4 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-7 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-6 | 59 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MPLEKYYCDY CDKQFQDTPY ARKRHLQGLQ HLRAKALWFD SFKLQDANQA YTEGFRKGVC 60 NHFVKTGFCQ YGDSCKYFHP KNNLSNVNAQ GVSGNFSDIQ LLAVMDDNQL PSIPGNQLIG 120 EGVVVQDSMG VSWGNLPPSL MPPPEEGYPP LPFVDWG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018816460.1 | 1e-104 | PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X3 | ||||
Swissprot | Q0JP11 | 5e-45 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A2I4EAN8 | 1e-102 | A0A2I4EAN8_JUGRE; zinc finger CCCH domain-containing protein 3 isoform X3 | ||||
STRING | EMJ07490 | 4e-71 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11959 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 5e-34 | C3H family protein |
Publications ? help Back to Top | |||
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