PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013720-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 157aa    MW: 17725 Da    PI: 6.0811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013720-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.2e-095981527
                        --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                         C++f +tG+C+yGd+Ck+ H++
  WALNUT_00013720-RA 59 VCNHFVKTGFCQYGDSCKYFHPK 81
                        6********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0018338IPR003604Zinc finger, U1-type
SuperFamilySSF576679.65E-15445No hitNo description
PfamPF062204.0E-10536IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.5775482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-85584IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-45681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-75984IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-65981IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MPLEKYYCDY CDKQFQDTPY ARKRHLQGLQ HLRAKALWFD SFKLQDANQA YTEGFRKGVC  60
NHFVKTGFCQ YGDSCKYFHP KNNLSNVNAQ GVSGNFSDIQ LLAVMDDNQL PSIPGNQLIG  120
EGVVVQDSMG VSWGNLPPSL MPPPEEGYPP LPFVDWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816460.11e-104PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X3
SwissprotQ0JP115e-45C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A2I4EAN81e-102A0A2I4EAN8_JUGRE; zinc finger CCCH domain-containing protein 3 isoform X3
STRINGEMJ074904e-71(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.15e-34C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]