PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013686-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 553aa MW: 60399.2 Da PI: 6.5257 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.2e-09 | 369 | 416 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq WALNUT_00013686-RA 369 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 416 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.28E-11 | 363 | 420 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-17 | 363 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-17 | 365 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 365 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-6 | 369 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-10 | 371 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MEKESTTPLN WTTSSFGMEI QPNDLNCAAA DQLPNSFFNP NWDNSVDQSD PFESALSSIV 60 SSPAASNAAA IPGRECLMIR ELIGRLGNIC NSGEISPQTY VAGNTTTNNN STNTSGYNTP 120 LNSPPKLNLS IMDSQIRGSL PINGHQVPFH PTLAPFSADP GFAERAARFS CFGNTNCIGL 180 NETDFPYGLM PGMEYGKMSN ASSNQQFKVV GSQMGVQENN KQEGNVVVKR KFIRLPRPST 240 PENAELGDSR EGSSVSEQIP GGEVSTKVDS DANARKRKSI SRGKAKETPS TPSAKHQKTT 300 VENEESNAKR SRQDEDAGNE KDSAKAKAKA DSKAAGDGNQ KQNKDNSKPP EPPKDYIHVR 360 ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE 420 FLSMKLATVN PRMDFNMEAQ LSKDIFQSRG ALPPTLYPLD SVMRSIPYGY QPQQMQALHG 480 GIANETENRF PVNSLSALSR NNPSVQLHLP PMDGYGEAVP QVSAPWEDDL QSVVQMGFGQ 540 NQQQSFHGIG IDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018828245.1 | 0.0 | PREDICTED: transcription factor bHLH77-like | ||||
TrEMBL | A0A2I4F9C9 | 0.0 | A0A2I4F9C9_JUGRE; transcription factor bHLH77-like | ||||
STRING | EOY05079 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2530 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 4e-77 | bHLH family protein |