PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00013582-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 460aa MW: 51004.7 Da PI: 6.5128 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 144 | 189 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ WALNUT_00013582-RA 144 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 189 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56 | 8.9e-18 | 196 | 239 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ WALNUT_00013582-RA 196 RRAFSEEEEERLRQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 239 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.838 | 139 | 190 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-27 | 143 | 237 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 143 | 192 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-16 | 144 | 189 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 145 | 196 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.63E-13 | 147 | 188 | No hit | No description |
PROSITE profile | PS51294 | 27.907 | 191 | 245 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-15 | 195 | 243 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 196 | 238 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-21 | 197 | 245 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-12 | 198 | 238 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 460 aa Download sequence Send to blast |
MTNKFAPENP SNLSCNSYRT PSSITSPLGM VYADMGSLSL SPNYGVASAI SSSQESTISK 60 SFEVENRRAS WGFPFMGSSI TRSFEEHHNS NAGEVKVSDS VYGFGQNNER MNQNVGLDDK 120 DSDENENALT VKETDSGQSK LCNRGHWRPA EDTKLKELVA LYGPQNWNLI AEKLEGRSGK 180 SCRLRWFNQL DPRINRRAFS EEEEERLRQA HRLYGNKWAM IARLFPGRTD NAVKNHWHVI 240 MARKLREQSS AHRRRKLGQS VYRRMEENPS FACRDAATRT ETLPYCLDFL SGGLINITSF 300 PFGTFNGASS GIDCGLNNGS PPMTSGELAI SSSEVLPYSG FCAQQASFDF FPGLPFAPIP 360 FCSSSLDAFG PKSNDKMGRH WDRPLEEAQA SGLYPDNHSP FFMAMQQSNN YNPFSFLDPS 420 APRPQVSASD PSLSATESGV ATHFETIPPP FIDFLGVGAT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-34 | 144 | 245 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-34 | 144 | 245 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018845242.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9SEZ4 | 3e-74 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A2I4GMW9 | 0.0 | A0A2I4GMW9_JUGRE; transcription factor MYB108-like | ||||
STRING | VIT_01s0026g02600.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-75 | myb domain protein 105 |
Publications ? help Back to Top | |||
---|---|---|---|
|