PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013573-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ZF-HD
Protein Properties Length: 313aa    MW: 34247.5 Da    PI: 9.0451
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013573-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.51.1e-3065121358
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                          + YkeClkNhAas+Gg a+DGCgEf+ps++++ +++++lkC ACgCHRnFHRr +e
  WALNUT_00013573-RA  65 VCSYKECLKNHAASMGGLALDGCGEFLPSPSAThSDPTSLKCGACGCHRNFHRRGTE 121
                         579***************************9999********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.3E-2567120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.46868119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1968118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-2868118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.5E-25192260IPR009057Homeodomain-like
SuperFamilySSF466893.46E-16192259IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-22199255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MESNPTTTTN SSTFPTQTPA TDTETPPQTQ PFKSLSFSNG SGLKPHNHQS TVRPPASAPL  60
PIMVVCSYKE CLKNHAASMG GLALDGCGEF LPSPSATHSD PTSLKCGACG CHRNFHRRGT  120
EDPAPKVLSI HRLSSPSPSP SPNTVCSPPP LSHLPPSQYY YSSVPQMLMS LSTASPKPSN  180
EHRQGSNPPV TRAENPLGRK RFRTKFTQEQ KQKMFLFCER LGWKMPKSNE MLVEFCNEVG  240
VNRRVLKVWM HNNKNPLRKK EMGFGHNSGV NDDNGNGGRV SFETNAYSCK KEIDNNEDAS  300
PNLHVSANGS PNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202002551874ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845220.10.0PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBLA0A2I4GMU70.0A0A2I4GMU7_JUGRE; zinc-finger homeodomain protein 11-like
STRINGcassava4.1_012790m1e-75(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-56homeobox protein 30