PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013569-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 409aa MW: 46133.1 Da PI: 7.2347

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013569-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	2e-52	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk +a+ekewyfF++rd+ky+++ r+nr+t +g+Wkatg+d++ WALNUT_00013569-RA 16 LLPGFRFHPTDEELVGFYLKRKIQQRHLPI-ELIKQLDIYKYDPWDLPKLGTAGEKEWYFFCPRDRKYRNSARPNRVTGAGFWKATGTDRP 105 579*************************.89***********87778999******************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl WALNUT_00013569-RA 106 IYSSqGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 143 9956667***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.22E-57	14	174	IPR003441	NAC domain
PROSITE profile	PS51005	57.496	16	174	IPR003441	NAC domain
Pfam	PF02365	2.0E-26	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MDVRSTDAEH KVDEILLPGF RFHPTDEELV GFYLKRKIQQ RHLPIELIKQ LDIYKYDPWD 60 LPKLGTAGEK EWYFFCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSQ GSKCIGLKKS 120 LVFYRGRAAK GIKTDWMMHE FRLPSLTDSL PSKRFVDKSI PANDSWAICR IFKKTNSTTQ 180 RTFSQYSWVS PVLPETNYSQ LFSSENMSLL STSKTSTCSA VDQFPINNDM AAFSPLGFPS 240 YQSLNQNIVD KPPQLPVLST GEHHPSFLFS PLETSVPAKC SLDMLLNMPP SMFGDSGNKL 300 AGIESIVDDY GTGPQEHCNG FSINLLQDMQ GGKVDESGGD EHHDNVSMKF NPNTDDQWET 360 VMKSIGFPFS LPLNSSSTIN AWKPNLAMWD SSPCPSEMST RFSTTKSYT

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MDVRSTDAEH KVDEILLPGF RFHPTDEELV GFYLKRKIQQ RHLPIELIKQ LDIYKYDPWD  60
LPKLGTAGEK EWYFFCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSQ GSKCIGLKKS  120
LVFYRGRAAK GIKTDWMMHE FRLPSLTDSL PSKRFVDKSI PANDSWAICR IFKKTNSTTQ  180
RTFSQYSWVS PVLPETNYSQ LFSSENMSLL STSKTSTCSA VDQFPINNDM AAFSPLGFPS  240
YQSLNQNIVD KPPQLPVLST GEHHPSFLFS PLETSVPAKC SLDMLLNMPP SMFGDSGNKL  300
AGIESIVDDY GTGPQEHCNG FSINLLQDMQ GGKVDESGGD EHHDNVSMKF NPNTDDQWET  360
VMKSIGFPFS LPLNSSSTIN AWKPNLAMWD SSPCPSEMST RFSTTKSYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-54	4	177	5	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018845151.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-101	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2I4GMN0	0.0	A0A2I4GMN0_JUGRE; putative NAC domain-containing protein 94
STRING	XP_010258365.1	1e-161	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-102	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]