PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013518-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 741aa MW: 83237 Da PI: 6.3665

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013518-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	387.7	1.3e-118	367	738	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cA+av+++d++ +++lL+++++++sp+gd mqR+a+yf+++L+ar+a+s++++y al +++ts +++l+a++lf ++P+ WALNUT_00013518-RA 367 LRTLLTLCAQAVATNDQKSTNELLKQIRQHSSPTGDGMQRVAHYFANGLEARIAGSGTQIYTALITRPTS---AADVLKAYHLFLGACPFR 454 5789**************************************************************99...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++s++ ++I++ +++++r+Hi+Df+i +G+QWp L+q L+sRp+gpp+lRiTg++ p++g +e++eetg rLak+Ae+++vpfefn+ WALNUT_00013518-RA 455 RLSNFFSDKTIMNLAKKATRLHIVDFGILYGFQWPGLIQRLSSRPGGPPKLRITGIDLPHPGfrPAERVEETGCRLAKYAETFNVPFEFNA 545 ********************************************************9999*********************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a++++++++e+L+++++E+l+Vn++++l +llde+v +es+rd vL+l+++++P+v+ ++ +++ F +rf eal +ys+lfd+l WALNUT_00013518-RA 546 -IAQKWDTIQIEDLKLENDEVLVVNCMYRLRNLLDETVVVESPRDIVLNLIRKMNPDVFLQGIENGAFSAPFFITRFREALFHYSTLFDML 635 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e+++ re eer +Ere++gre++nv+aceg+er+er et+++W+ r ++GF+p+pl+ ++++ ak ++k + + + ++e+ ++l++gW WALNUT_00013518-RA 636 ETNVRREIEERLLIEREIFGREAMNVIACEGSERIERPETYKQWQVRNLRCGFRPLPLNREIVNIAKDRVKKSYHKDFLIDEDGEWLLQGW 726 **********************************************************************888********** PP GRAS 363 kdrpLvsvSaWr 374 k+r +++S+Wr WALNUT_00013518-RA 727 KGRITYALSSWR 738 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.505	341	718	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-116	367	738	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MDKSSRGLYG STKGLKAGDQ TFLESCNQNL IRRFEMDNTL VDRNHTCIPP LPPDPTPSNL 60 ESTSSVNSGG DLHEECDFSD VALRYINQML MEEDMEEKAC MFQEALQATE KSLYEVLGEK 120 YPPTPDHGLA PYVDQKLETP DESLDLNRNG FEFSTSSTRG KNVADTRWSS YLGEPNSSHI 180 VLEPTSESSC SSSHSTNVAD GFADSPVSTL IVPDIFSETD SAMQFKRGFE EASKFLPNGN 240 GPMVGLKSNS LFFKSKEDAK DVVAKAEEKH ESQHLDGMRG KKNPHPVDVN FDGGRSNKQS 300 SVYSESTVTP EMFDMVLLNG GKGESMLCQA LQNGASMNVR QNGRSKGSNG GRARGRRQGG 360 KRDVVDLRTL LTLCAQAVAT NDQKSTNELL KQIRQHSSPT GDGMQRVAHY FANGLEARIA 420 GSGTQIYTAL ITRPTSAADV LKAYHLFLGA CPFRRLSNFF SDKTIMNLAK KATRLHIVDF 480 GILYGFQWPG LIQRLSSRPG GPPKLRITGI DLPHPGFRPA ERVEETGCRL AKYAETFNVP 540 FEFNAIAQKW DTIQIEDLKL ENDEVLVVNC MYRLRNLLDE TVVVESPRDI VLNLIRKMNP 600 DVFLQGIENG AFSAPFFITR FREALFHYST LFDMLETNVR REIEERLLIE REIFGREAMN 660 VIACEGSERI ERPETYKQWQ VRNLRCGFRP LPLNREIVNI AKDRVKKSYH KDFLIDEDGE 720 WLLQGWKGRI TYALSSWRPV G

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MDKSSRGLYG STKGLKAGDQ TFLESCNQNL IRRFEMDNTL VDRNHTCIPP LPPDPTPSNL  60
ESTSSVNSGG DLHEECDFSD VALRYINQML MEEDMEEKAC MFQEALQATE KSLYEVLGEK  120
YPPTPDHGLA PYVDQKLETP DESLDLNRNG FEFSTSSTRG KNVADTRWSS YLGEPNSSHI  180
VLEPTSESSC SSSHSTNVAD GFADSPVSTL IVPDIFSETD SAMQFKRGFE EASKFLPNGN  240
GPMVGLKSNS LFFKSKEDAK DVVAKAEEKH ESQHLDGMRG KKNPHPVDVN FDGGRSNKQS  300
SVYSESTVTP EMFDMVLLNG GKGESMLCQA LQNGASMNVR QNGRSKGSNG GRARGRRQGG  360
KRDVVDLRTL LTLCAQAVAT NDQKSTNELL KQIRQHSSPT GDGMQRVAHY FANGLEARIA  420
GSGTQIYTAL ITRPTSAADV LKAYHLFLGA CPFRRLSNFF SDKTIMNLAK KATRLHIVDF  480
GILYGFQWPG LIQRLSSRPG GPPKLRITGI DLPHPGFRPA ERVEETGCRL AKYAETFNVP  540
FEFNAIAQKW DTIQIEDLKL ENDEVLVVNC MYRLRNLLDE TVVVESPRDI VLNLIRKMNP  600
DVFLQGIENG AFSAPFFITR FREALFHYST LFDMLETNVR REIEERLLIE REIFGREAMN  660
VIACEGSERI ERPETYKQWQ VRNLRCGFRP LPLNREIVNI AKDRVKKSYH KDFLIDEDGE  720
WLLQGWKGRI TYALSSWRPV G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-53	374	739	26	380	Protein SCARECROW
5b3h_A	2e-53	374	739	25	379	Protein SCARECROW
5b3h_D	2e-53	374	739	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018814536.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2I4E557	0.0	A0A2I4E557_JUGRE; scarecrow-like protein 14
STRING	EOY18043	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]