PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013489-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Dof
Protein Properties Length: 353aa    MW: 37419.7 Da    PI: 8.79
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013489-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.23.6e-3876135362
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         e+alkcprC+stntkfCy+nnys sqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  WALNUT_00013489-RA  76 EAALKCPRCESTNTKFCYFNNYSRSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 135
                         6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3062131IPR003851Zinc finger, Dof-type
PfamPF027013.1E-3278133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.34879133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWQQQAQ SNYQQRPTGV GSENLQLPPP PPRTDVGSGG GGGPGSIRPG  60
SMADRARLAK IPQTAEAALK CPRCESTNTK FCYFNNYSRS QPRHFCKTCR RYWTRGGALR  120
NVPVGGGCRR NKRSKSSTST RPKSPATAAG SSSTSTVSSN CCATDMLSHL PPPPSSQLHF  180
LPPLHHLISG YASGDIGLNF GGFQPPEVAT VGGSDGGDVE FQIGTSSSAV GSILSTGLAE  240
QWRLPQVQQA QQFPFLADLE PPNIGLFQCD QGDNVERPSY VGVTGQLRSK PLDSAVTGFS  300
QLASVKVEDI NKGLSLSRNN ILGTAGSDQY WLGGGSAWTD LSGFTSSSTS HIL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814426.10.0PREDICTED: dof zinc finger protein DOF3.6 isoform X1
TrEMBLA0A2I4E4U50.0A0A2I4E4U5_JUGRE; dof zinc finger protein DOF3.6 isoform X1
STRINGAquca_003_00022.11e-115(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.22e-42OBF-binding protein 3