PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013458-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 414aa    MW: 46646.3 Da    PI: 7.3968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013458-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.81.6e-3189193199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  WALNUT_00013458-RA  89 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvG 179
                         89**************************99556678899************************************************6557 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  WALNUT_00013458-RA 180 EqGRDRLFIDWRRR 193
                         77888999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-4280198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2986193IPR015300DNA-binding pseudobarrel domain
CDDcd100174.81E-2687176No hitNo description
PfamPF023624.5E-2989193IPR003340B3 DNA binding domain
PROSITE profilePS5086314.76289194IPR003340B3 DNA binding domain
SMARTSM010196.6E-2389194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDLRTPREDL SCEEHEHMVR GKLPFSNSSS SPSYEAASDH VNKLHELMDM SPRNEDDDVR  60
RGDSQDDGLG SGSTITGRGN NIMEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDST  120
TNEKGLLLNF EDRNGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFQRGVGE  180
QGRDRLFIDW RRRPDAPDPM ASLPNLPSHY FSFHRSIPSA WSTSSPNLLM RPRDHLHLSS  240
QQMMNVNSSN NVNLQHPYRH SYGSSAYCNY MVNPSLIYMR SAAAAVSPQQ HHHHHGHHDQ  300
THEQLGLVRN ISAVEPPLVF ESVPVVQGKV AAKRLRLFGV NMDCPISESD ACDVILSSTT  360
IGGPHATMTL QPSQLSSSSQ SVLPFRPYNG TPLPTMPTNF LDKGKASMSL DFDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-66821941114B3 domain-containing transcription factor NGA1
5os9_B1e-66821941114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839976.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR94e-81Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2I4G7V00.0A0A2I4G7V0_JUGRE; B3 domain-containing protein Os03g0120900-like
STRINGEOY238141e-124(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-68B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]