PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013375-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 407aa MW: 45749.8 Da PI: 7.2605

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013375-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.2	2.6e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++ WALNUT_00013375-RA 14 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKFDPWDLPKLAPTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 103 579*************************.89***********9888999******************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl WALNUT_00013375-RA 104 IYSSeSSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 141 856677**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-58	13	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.406	14	172	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MDERGDADKL DEILLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKFDPWDLP 60 KLAPTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSESS KCIGLKKSLV 120 FYKGRAAKGV KTDWMMHEFR LPSLTDSAPP KRFVDKSIPA NDSWAICRIF KKTNSTTQRA 180 FSHSWVSPGV LPESNITHHD MLPKCPHYTQ FGSENMSLAS KTSCTPAIQF SFNNDITAFS 240 PLDFASYRSL NQMAVDKVPP QLPNISTEEH HSSFFFSPLE TSVPAKCTTV DISSMLLNMP 300 SSMLGDFGTK SFQSTVDYGS GPKEPCNGLI SINLLQDMQR NVDGGGEQAH ALMKNPLTDD 360 QLDSVHSIGF PFSLPLNNDA WKLDLAWDSS PCPSEMSTSF STTKSYA

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MDERGDADKL DEILLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKFDPWDLP  60
KLAPTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSESS KCIGLKKSLV  120
FYKGRAAKGV KTDWMMHEFR LPSLTDSAPP KRFVDKSIPA NDSWAICRIF KKTNSTTQRA  180
FSHSWVSPGV LPESNITHHD MLPKCPHYTQ FGSENMSLAS KTSCTPAIQF SFNNDITAFS  240
PLDFASYRSL NQMAVDKVPP QLPNISTEEH HSSFFFSPLE TSVPAKCTTV DISSMLLNMP  300
SSMLGDFGTK SFQSTVDYGS GPKEPCNGLI SINLLQDMQR NVDGGGEQAH ALMKNPLTDD  360
QLDSVHSIGF PFSLPLNNDA WKLDLAWDSS PCPSEMSTSF STTKSYA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	6	178	8	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	6	178	8	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	6	178	8	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	6	178	8	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	6	178	11	174	NAC domain-containing protein 19
3swm_B	2e-53	6	178	11	174	NAC domain-containing protein 19
3swm_C	2e-53	6	178	11	174	NAC domain-containing protein 19
3swm_D	2e-53	6	178	11	174	NAC domain-containing protein 19
3swp_A	2e-53	6	178	11	174	NAC domain-containing protein 19
3swp_B	2e-53	6	178	11	174	NAC domain-containing protein 19
3swp_C	2e-53	6	178	11	174	NAC domain-containing protein 19
3swp_D	2e-53	6	178	11	174	NAC domain-containing protein 19
4dul_A	2e-53	6	178	8	171	NAC domain-containing protein 19
4dul_B	2e-53	6	178	8	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018817667.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-109	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2I4EE44	0.0	A0A2I4EE44_JUGRE; protein FEZ-like
STRING	VIT_01s0026g02360.t01	1e-180	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-109	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]