PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013347-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 602aa    MW: 65295.4 Da    PI: 8.6131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013347-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15383429455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRd+iN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  WALNUT_00013347-RA 383 VHNLSERRRRDKINKRMRVLKELIPNC-----NKVDKASMLDEAIEYLKTLQ 429
                         5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-20376450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-19377439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.765379428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.68E-17382433No hitNo description
PfamPF000103.5E-13383429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MTEDDMLEST RPRTTCRLPT LAPMFEDDCM ELVWENGQIL MRGRSGRAQK GHSWTGYSLS  60
SSNAQAENGE NMHTKKARLE TSCSTLNDTA FLGLLGRRDS DINSTDNNNS SQTGYHLESS  120
PQLYKFNLED NKGKSEDKKS KHSRPFQEPE LATSGYSRAS ETVLGPKLNS SKTLLPTGTE  180
QHTSTLPERD SQPDKKYGAV KISYSRSPAI LQASSQSSGV TRPTSSLVFT GVQETKGGND  240
ERPPPLGGRN ALKSTVIEQA TASKSVTGIQ NQAQAELLPP VAKTKEPLPR EHSEAFGNQT  300
SSLAENTRKG KTDVKILTKP PVTSSSVCSL GASNDPTYSL RRTYEETESS AGPSENVEEP  360
QGLRKQAPGR SCTGGKRSRT AEVHNLSERR RRDKINKRMR VLKELIPNCN KVDKASMLDE  420
AIEYLKTLQL QLQIMSMGNG VCMHPMMLPT AMQHINAAHL THFSAMGAGM GMRMGMGMGC  480
SPAQFSTSQV GATALPGITG TSFQMLGFPG QAFPMPVSHP SFFPSLGSQP NQSVLAHGIS  540
GASPLVEHLG SVPLTGSEDF SQNIYSEKIN HGNTESSKIQ ASRLPEMLMI SNSCSLHFPP  600
VQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387392ERRRRD
2388393RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843145.10.0PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_018843146.10.0PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_018843147.10.0PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_018843148.10.0PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A2I4GGX20.0A0A2I4GGX2_JUGRE; transcription factor PIF3-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-31phytochrome interacting factor 3