PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013282-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 312aa    MW: 33830.3 Da    PI: 5.04
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013282-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-102542931255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         RR +i +++ +L++l+P+     +k  + a++L +AveYIk+Lq
  WALNUT_00013282-RA 254 RRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKDLQ 293
                         ******************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003531.4E-8241298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.331242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14253305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7254293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-11254297No hitNo description
Gene3DG3DSA:4.10.280.105.5E-16255308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSSGGTHDDA SVSAKEADHQ STQFMASMNN EAAGVVQQQK NYGSASQNFY QNPSRPPLPN  60
QGLNSSLEGS YSMRMDRILP QTKTGAGGGN NNSSLVRHNS LPAGSFSHIN VENSYAAMRG  120
MGSFGGSKGT SEEAPFSTAS RLKNYSSVPT SAAAGIMAPI PEFEDKNMAA SNPDSGFPIG  180
SWDDSDMISD LKRVTDDDID ADAMTLSSID VSETQNMEYG NRPRSGLARH LSLPKTAAEM  240
AAIEKFLQFQ DSVRRTKISE RMRKLQDLVP NMDKQTNTAD MLDLAVEYIK DLQNQVQELS  300
ENRARCTCSS NK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851501.10.0PREDICTED: transcription factor bHLH122-like
TrEMBLA0A2I4H5T50.0A0A2I4H5T5_JUGRE; transcription factor bHLH122-like
STRINGXP_008219331.11e-107(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-45bHLH family protein