PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00013266-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 458aa MW: 50716.9 Da PI: 9.4118 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 328 | 375 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT+ E +lvd++ ++G g+W+ I r + Rt+ +++++w+++l WALNUT_00013266-RA 328 WTPSEVIKLVDGISEYGVGRWTDIKRLLFstsAYRTPIDLRDKWRNLL 375 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-11 | 319 | 377 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.323 | 320 | 379 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-15 | 322 | 397 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-9 | 324 | 377 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.43E-16 | 326 | 376 | No hit | No description |
Pfam | PF00249 | 1.4E-6 | 328 | 375 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 458 aa Download sequence Send to blast |
MGKEALHKKV ANVECQKVKK DESCVSALED EAIEVEHLLA EPKNEHVSVD GVLSFGEESL 60 EKCFQIEDFS CGFGFGLALN NDIEFAEKAS KLDSGPSEAT CLGNSSLESL SPGLSGSCNG 120 AVGISESSTA TILESECKNN ALDKIVTCKL HGGFMSKCGC QPPAEDSIHM ASIELRKLDD 180 LDHDENLLAC GILSTGTGKR SLEVSRIDEL LREKRLRKPT RRYIEESSAK KSGYLKGREK 240 YPVASTKDTS LKVKSCNELH NTGRRASTVI HEEKSLCGIR VRRGRPKKLV PQSGLESDKE 300 PLSSESEDNC ATKKKAKKHD RRKHQRMWTP SEVIKLVDGI SEYGVGRWTD IKRLLFSTSA 360 YRTPIDLRDK WRNLLRASGA EKPNKKGVEQ KQEHSLRPLP SSLLRRVREL AKIHPYPRVR 420 ISKKSCIGQV APAMHPGACK SAPPSSLSGR RVRRKNFT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018851477.1 | 0.0 | PREDICTED: uncharacterized protein LOC109013738 isoform X1 | ||||
Refseq | XP_018851478.1 | 0.0 | PREDICTED: uncharacterized protein LOC109013738 isoform X1 | ||||
Refseq | XP_018851479.1 | 0.0 | PREDICTED: uncharacterized protein LOC109013738 isoform X1 | ||||
TrEMBL | A0A2I4H5R2 | 0.0 | A0A2I4H5R2_JUGRE; uncharacterized protein LOC109013738 isoform X1 | ||||
STRING | XP_008243959.1 | 1e-133 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72650.2 | 7e-20 | TRF-like 6 |