PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013245-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LBD

Protein Properties

Length: 138aa MW: 15464.1 Da PI: 6.5033

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013245-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.8	1.8e-19	1	55	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e WALNUT_00013245-RA 1 MQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDDLQTQLALAQAE 55 6899**********************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.8E-17	1	53	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	12.139	1	56	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MQELPEHQRS DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QVDDLQTQLA LAQAEVVHMK 60 MRQHPASSIS TSTTTTSNYP PTTMNSPPDL NNSFPASAKS HHHYHHHHLP SQTKSFFPMD 120 IVHEIDHQAN MGESLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-19	1	58	56	113	LOB family transfactor Ramosa2.1
5ly0_B	7e-19	1	58	56	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018829951.1	1e-98	PREDICTED: LOB domain-containing protein 4-like
Refseq	XP_018829952.1	1e-98	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	2e-27	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2I4FE89	3e-97	A0A2I4FE89_JUGRE; LOB domain-containing protein 4-like
STRING	EOY13865	1e-48	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-19	LOB domain-containing protein 4