PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013243-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 119aa MW: 13337 Da PI: 10.3066 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.2 | 1.8e-28 | 8 | 91 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel........vglkktLvfykgrapkgektdWvmheyrl 128 a+++e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s+kg++ +glkktLv+y+g+a kg+ktdW+mhe+rl WALNUT_00013243-RA 8 AKDTEEYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKQVYSAKGSAdrhshhvcIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 91 567899************************************9444455566777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.103 | 1 | 119 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-29 | 8 | 100 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-13 | 13 | 91 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MEAAGSTAKD TEEYFFCKRG RKYRNSIRPN RVTGSGFWKA TGIDKQVYSA KGSADRHSHH 60 VCIGLKKTLV YYRGSAGKGT KTDWMMHEFR LPADHDTNTN LSNSKSTAPE AAILMKTFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-23 | 10 | 103 | 70 | 156 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-23 | 10 | 103 | 70 | 156 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-23 | 10 | 103 | 70 | 156 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-23 | 10 | 103 | 70 | 156 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-23 | 10 | 103 | 73 | 159 | NAC domain-containing protein 19 |
3swm_B | 4e-23 | 10 | 103 | 73 | 159 | NAC domain-containing protein 19 |
3swm_C | 4e-23 | 10 | 103 | 73 | 159 | NAC domain-containing protein 19 |
3swm_D | 4e-23 | 10 | 103 | 73 | 159 | NAC domain-containing protein 19 |
3swp_A | 4e-23 | 10 | 103 | 73 | 159 | NAC domain-containing protein 19 |
3swp_B | 4e-23 | 10 | 103 | 73 | 159 | NAC domain-containing protein 19 |
3swp_C | 4e-23 | 10 | 103 | 73 | 159 | NAC domain-containing protein 19 |
3swp_D | 4e-23 | 10 | 103 | 73 | 159 | NAC domain-containing protein 19 |
4dul_A | 4e-23 | 10 | 103 | 70 | 156 | NAC domain-containing protein 19 |
4dul_B | 4e-23 | 10 | 103 | 70 | 156 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ618146 | 1e-164 | JQ618146.1 Juglans mandshurica clone NS21 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018829953.1 | 2e-77 | PREDICTED: transcription factor JUNGBRUNNEN 1-like, partial | ||||
Swissprot | Q9SK55 | 6e-39 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2I4FE87 | 5e-76 | A0A2I4FE87_JUGRE; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | EOY13743 | 5e-48 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-42 | NAC family protein |