PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013170-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36328.8 Da PI: 6.2526 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 5.7e-15 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++ + G g+W+ +a+ g+ R++k+c++rw +yl WALNUT_00013170-RA 21 KGLWSPEEDDKLMNYMLKNGQGCWSDVAKNAGLQRCGKSCRLRWINYL 68 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.8e-15 | 74 | 116 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k++w+ WALNUT_00013170-RA 74 RGAFSPQEEALIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWN 116 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 14 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.372 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-28 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-11 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 21 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.40E-9 | 24 | 68 | No hit | No description |
PROSITE profile | PS51294 | 24.593 | 69 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 72 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 74 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-10 | 76 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MRKPEPFSAG KDNHSNNKLR KGLWSPEEDD KLMNYMLKNG QGCWSDVAKN AGLQRCGKSC 60 RLRWINYLRP DLKRGAFSPQ EEALIIHLHS LLGNRWSQIA ARLPGRTDNE IKNFWNSSVK 120 KRLKTLSATT SSTSTSDSSS PKDGMGSGLM ISMQEQGIMP IMYMDSSSAS SSMQNMAGLN 180 HMVDPLHMLQ HGLNMSSACT GCLNTPQYMT QIGVGTGDSF DGENGAFGGL DIGLGELFVP 240 PLESVNVEDQ KAKTENTNKW STNNNTGLYN TNNISNYNNN INARAENLAR VNGNCWEVDQ 300 ELRMGEWDLE ELMKDVPSFS LVDFQIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 16 | 123 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP711284 | 1e-104 | KP711284.1 Betula platyphylla MYB transcription factor 46 (MYB46) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018830879.1 | 0.0 | PREDICTED: transcription factor MYB46-like | ||||
TrEMBL | A0A2I4FGV6 | 0.0 | A0A2I4FGV6_JUGRE; transcription factor MYB46-like | ||||
STRING | cassava4.1_011597m | 1e-120 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 2e-70 | myb domain protein 46 |