PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013091-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 434aa    MW: 48780.1 Da    PI: 5.5284
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013091-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.79.1e-1882170298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +k++++s+v+   +l lpk+f+++h  +k  + t++ledesg+++e k+ ++k +    l++GW++F  +++L egD+vvF+l++ s+f  
  WALNUT_00013091-RA  82 IKTMSRSHVTVGFWLGLPKHFCSAHL-PK-HDATIVLEDESGEEFETKYLVEKVG----LSAGWRGFSISHKLLEGDIVVFHLVEPSKF-- 164
                         699********************994.33.5579***************444444....************************988888.. PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                         +v ++r
  WALNUT_00013091-RA 165 KVYIVR 170
                         776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-2374173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-2074172IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-2679170No hitNo description
SMARTSM010194.0E-1981172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.78881172IPR003340B3 DNA binding domain
PfamPF023623.8E-1582170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAMIEKLERP PKTEENMFRK KSSGFNQMTT TQGVNDADKL RSFKRKRATT DCLNVSSEAQ  60
SSVLQQAKEV QANLEPDFPS LIKTMSRSHV TVGFWLGLPK HFCSAHLPKH DATIVLEDES  120
GEEFETKYLV EKVGLSAGWR GFSISHKLLE GDIVVFHLVE PSKFKVYIVR YNGSDEVNGA  180
LALLKLDACP KQLICDVDTK ACEKIEIENL ESLSHKNSQK NNLMVCGTDL RPISDPLEDD  240
SDFSSEILDG IRLAESVVDF KQVRSIEDFV VLVNGLVINS ELPKFLLTKY HKLCCSQKAF  300
LHDHLLEGLN CKLAAGIISE TINISDAIRA SKICTSQDNF STWEKTLKAF EVLGMNVGFL  360
LARLEQLMNI SLKSKRYKEA IVERAHAEEE IKALETKLLE AKEKMNSLDI EIENLDVTAN  420
KLELLFVEVA NAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835569.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A2I4FV930.0A0A2I4FV93_JUGRE; B3 domain-containing protein Os01g0234100-like isoform X1
STRINGXP_008236526.11e-173(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-39B3 family protein