PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013091-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | B3 | ||||||||
Protein Properties | Length: 434aa MW: 48780.1 Da PI: 5.5284 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 9.1e-18 | 82 | 170 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +k++++s+v+ +l lpk+f+++h +k + t++ledesg+++e k+ ++k + l++GW++F +++L egD+vvF+l++ s+f WALNUT_00013091-RA 82 IKTMSRSHVTVGFWLGLPKHFCSAHL-PK-HDATIVLEDESGEEFETKYLVEKVG----LSAGWRGFSISHKLLEGDIVVFHLVEPSKF-- 164 699********************994.33.5579***************444444....************************988888.. PP EEEEE- CS B3 93 vvkvfr 98 +v ++r WALNUT_00013091-RA 165 KVYIVR 170 776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.51E-23 | 74 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-20 | 74 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-26 | 79 | 170 | No hit | No description |
SMART | SM01019 | 4.0E-19 | 81 | 172 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.788 | 81 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-15 | 82 | 170 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MAMIEKLERP PKTEENMFRK KSSGFNQMTT TQGVNDADKL RSFKRKRATT DCLNVSSEAQ 60 SSVLQQAKEV QANLEPDFPS LIKTMSRSHV TVGFWLGLPK HFCSAHLPKH DATIVLEDES 120 GEEFETKYLV EKVGLSAGWR GFSISHKLLE GDIVVFHLVE PSKFKVYIVR YNGSDEVNGA 180 LALLKLDACP KQLICDVDTK ACEKIEIENL ESLSHKNSQK NNLMVCGTDL RPISDPLEDD 240 SDFSSEILDG IRLAESVVDF KQVRSIEDFV VLVNGLVINS ELPKFLLTKY HKLCCSQKAF 300 LHDHLLEGLN CKLAAGIISE TINISDAIRA SKICTSQDNF STWEKTLKAF EVLGMNVGFL 360 LARLEQLMNI SLKSKRYKEA IVERAHAEEE IKALETKLLE AKEKMNSLDI EIENLDVTAN 420 KLELLFVEVA NAPW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835569.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
TrEMBL | A0A2I4FV93 | 0.0 | A0A2I4FV93_JUGRE; B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
STRING | XP_008236526.1 | 1e-173 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-39 | B3 family protein |