PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012939-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SRS
Protein Properties Length: 203aa    MW: 22126 Da    PI: 8.6513
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012939-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702170.96.4e-53141444154
              DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 
                         g+++CqdCGnqakk+C+++RCRtCC+++gf+C+thvkstWvp ++r +rqqqlaa   +   + + +++kr+r+             +ss+
  WALNUT_00012939-RA  14 GGSRCQDCGNQAKKECEYMRCRTCCRNKGFQCQTHVKSTWVPLYRRHQRQQQLAAVLPQ---HLRGHNPKRHRQI------------TSSG 89 
                         7889*************************************************998544...4556677777764............2222 PP

              DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              ++ ++lP+ev++ a f+c+rvssvdd+ +e+aYqt+v+igGhvfkG+LydqG+e+
  WALNUT_00012939-RA  90 -----SDEANLPAEVHTVATFSCIRVSSVDDAVAEYAYQTSVEIGGHVFKGMLYDQGPES 144
                         .....34567************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.0E-5215143IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.9E-261859IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.9E-2395142IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MMMRQGGGGG GGIGGSRCQD CGNQAKKECE YMRCRTCCRN KGFQCQTHVK STWVPLYRRH  60
QRQQQLAAVL PQHLRGHNPK RHRQITSSGS DEANLPAEVH TVATFSCIRV SSVDDAVAEY  120
AYQTSVEIGG HVFKGMLYDQ GPESRYAAGE SSSLTLQPVN AAALAPVTTI NSATAEPLHP  180
PICPFPFTAN FMPGTQFLQR PTS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815317.11e-145PREDICTED: protein SHI RELATED SEQUENCE 1
SwissprotQ9XGX08e-52SHI_ARATH; Protein SHORT INTERNODES
TrEMBLA0A2I4E7E31e-144A0A2I4E7E3_JUGRE; protein SHI RELATED SEQUENCE 1
STRINGPOPTR_0009s12450.13e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.18e-55Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]