PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012939-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | SRS | ||||||||
Protein Properties | Length: 203aa MW: 22126 Da PI: 8.6513 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 170.9 | 6.4e-53 | 14 | 144 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 g+++CqdCGnqakk+C+++RCRtCC+++gf+C+thvkstWvp ++r +rqqqlaa + + + +++kr+r+ +ss+ WALNUT_00012939-RA 14 GGSRCQDCGNQAKKECEYMRCRTCCRNKGFQCQTHVKSTWVPLYRRHQRQQQLAAVLPQ---HLRGHNPKRHRQI------------TSSG 89 7889*************************************************998544...4556677777764............2222 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ ++lP+ev++ a f+c+rvssvdd+ +e+aYqt+v+igGhvfkG+LydqG+e+ WALNUT_00012939-RA 90 -----SDEANLPAEVHTVATFSCIRVSSVDDAVAEYAYQTSVEIGGHVFKGMLYDQGPES 144 .....34567************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.0E-52 | 15 | 143 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.9E-26 | 18 | 59 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.9E-23 | 95 | 142 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MMMRQGGGGG GGIGGSRCQD CGNQAKKECE YMRCRTCCRN KGFQCQTHVK STWVPLYRRH 60 QRQQQLAAVL PQHLRGHNPK RHRQITSSGS DEANLPAEVH TVATFSCIRV SSVDDAVAEY 120 AYQTSVEIGG HVFKGMLYDQ GPESRYAAGE SSSLTLQPVN AAALAPVTTI NSATAEPLHP 180 PICPFPFTAN FMPGTQFLQR PTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018815317.1 | 1e-145 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9XGX0 | 8e-52 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A2I4E7E3 | 1e-144 | A0A2I4E7E3_JUGRE; protein SHI RELATED SEQUENCE 1 | ||||
STRING | POPTR_0009s12450.1 | 3e-76 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 8e-55 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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