PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012927-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 349aa    MW: 38534.8 Da    PI: 4.9836
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012927-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.7e-19266299134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs+C++ kTp+WR gp+g+ktLCnaCG++y++ +
  WALNUT_00012927-RA 266 CSHCQVQKTPQWRTGPRGPKTLCNACGVRYKSGR 299
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.0E-8134346IPR016679Transcription factor, GATA, plant
SMARTSM004013.4E-16260314IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-14261322No hitNo description
Gene3DG3DSA:3.30.50.108.2E-15264297IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.53264296IPR000679Zinc finger, GATA-type
CDDcd002022.48E-14265313No hitNo description
PfamPF003209.8E-17266299IPR000679Zinc finger, GATA-type
PROSITE patternPS003440266291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MLNVEMEYCV EARAFKPSLR GELAMTLIQQ GTSIQQVTSE DCWGAGGVPS EDFSVDDLLD  60
LSNAEFEDRY VVEQEEEEEE VEKDSLSGSS SQDQADEDSS NSTNFSGTAE SESHLASELA  120
VPDDDLAELE WVSRIVDDSL LDFSISYAAG KQKTETRIMN RSEPETKQRS TSTKPSCFPS  180
PVPSKARSKR TRATNHVWTL GSSLSESPSP SSASSPGSSS TTCLIFANKV QNMELFAFAE  240
PPTKKQKKKP TVQIVGVGGT PFQRRCSHCQ VQKTPQWRTG PRGPKTLCNA CGVRYKSGRL  300
FPEYRPACSP TFSIDVHSNS HRKVLEMRKR KETMIEPESG FSQMVPTFG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815356.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLA0A2I4E7I20.0A0A2I4E7I2_JUGRE; GATA transcription factor
STRINGXP_008236855.11e-114(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-54GATA transcription factor 5