PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00012687-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 280aa MW: 30731.2 Da PI: 8.7973

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00012687-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.7e-39	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGg +rknk+s WALNUT_00012687-RA 37 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGVSRKNKRSA 97 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-28	24	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEEIVT NTCPKPAALE RKARPQKEQA LNCPRCNSTN TKFCYYNNYS 60 LTQPRYFCKT CRRYWTEGGS LRNIPVGGVS RKNKRSASST SSSSSRTLPN LVTHQSLSQS 120 SSQNPKIGEG QDLNLAFPAT QDFRTISELI QLPSIQNGNK NQISTTSTTS STTAQLSALE 180 LLTGLTSRGF NSFMPMSIPD PNSAHTSGFP LQDFKPNLNF SLDGFASGYG SFQGVQETSG 240 RLLFPFEDLK QVSHTSGIEQ NKEQGDSTGF WTGMLGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243101	6e-75	AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018824384.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	1e-71	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A2I4EYA5	0.0	A0A2I4EYA5_JUGRE; dof zinc finger protein DOF4.6-like
STRING	EOY23946	1e-155	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-63	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]