PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012684-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 845aa    MW: 93696.7 Da    PI: 4.6607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012684-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.00076336701355
                         HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R++i +++ eLr ++P+      +K s  + L ++++Y+  Lq
  WALNUT_00012684-RA 633 RQQIQDRIKELRGIIPHG-----GKCSIDSLLDRTIKYMFFLQ 670
                         89***************8.....7888889999***9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-1358148IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.455620669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-5633675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-4633673IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MGEADASSVL KKTLKSLCCR DGWSYGVFWR FVQRDSLLLT FDDAYYEEQV GAVVEMFPLV  60
HILGEGVIGQ AAFTGRHRWM FSDAHGGEWG SFPSQDIFQD DSEFHNQFSS GIKTIAVISV  120
APIGVVQFGS TQKILERSEF LDQTKRLFQE MENACSLIPL EKNALSLNDE NYIRNGIFAS  180
LISSGNSCDG DLNAIHYDCR RELLGEACSA TILNELSDSI FGTHDEMMAP TLIDLSHPNH  240
QLQTGGTNTR VLLSDKLSSQ FQQESLQSVP SVCKRSSRDS ILTPFIPLLA SESTVQDSSN  300
LFTPKANTLD SCQNRASNVQ GDDLSQHVCP TYLTRSELVE KATNMHKFAE EFRPDDFTTE  360
VSEFCLVDDL SQWFSPSPEY SINRLETAFR NELSQPIGVA SASSCLVGDD IFNHFPIKHP  420
ENSMQSSIIN ACKSNGLENS AIMHAVENDL FNDLGLEFDP NQSGECWEDL IMPIMSAATG  480
MGMSECVSEL DIGSMTSPRK GLFSELGLQE LLDGISNSKS FAKSSFEEKL STTKRRRVDS  540
SSVNSNQSQL ESLACSSGSM NMMQPEYNPE KKNNVPKKEL LPKSQVGLWI DDSYSVNVGI  600
AGLARSLKPE EPTKATRKRA RPGESTRPRP KDRQQIQDRI KELRGIIPHG GKCSIDSLLD  660
RTIKYMFFLQ SVAKYADRLK HSDEPKLIGQ ETGVVLKENA MDVVSGGTTW AFEVGSKTMV  720
CPIIVEDLNP PGQGQMLIEM LCEEQGLFLE IADAIRGLRL NILKGVMEAR DDKIWTRFIV  780
EASSNVTRID VFLSLVQLLN QTKTTENDTT DRRSNAIDGV GISLLDNYQQ QAMLCPITLA  840
ETLGC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1533537KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824283.10.0PREDICTED: transcription factor bHLH155-like
TrEMBLA0A2I4EY050.0A0A2I4EY05_JUGRE; transcription factor bHLH155-like
STRINGXP_008239218.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69551621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.19e-51conserved peptide upstream open reading frame 7