PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012626-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 470aa MW: 50358.7 Da PI: 8.8078 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.3 | 3.9e-11 | 46 | 72 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ WALNUT_00012626-RA 46 PGVPNCVYYMRTGFCGYGGRCRYNHPR 72 5789*********************96 PP | |||||||
2 | zf-CCCH | 41.9 | 1.7e-13 | 93 | 117 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+++++tGtCk+G++CkF+H++ WALNUT_00012626-RA 93 EPLCQYYLKTGTCKFGASCKFHHPK 117 79*********************96 PP | |||||||
3 | zf-CCCH | 37.6 | 3.7e-12 | 139 | 163 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+++++tG+Ck+G +CkF+H++ WALNUT_00012626-RA 139 EIDCSYYLKTGQCKFGVTCKFHHPQ 163 568********************97 PP | |||||||
4 | zf-CCCH | 36.5 | 7.9e-12 | 297 | 320 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G++C+++H++ WALNUT_00012626-RA 297 LECQYYMRTGDCKFGSSCRYHHPR 320 58********************96 PP | |||||||
5 | zf-CCCH | 33.7 | 6.3e-11 | 339 | 364 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G+Ck+G++CkF H++ WALNUT_00012626-RA 339 GVQPCAFYLQNGHCKFGPTCKFDHPM 364 6789********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.535 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-6 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-8 | 47 | 72 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 51 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.882 | 90 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-7 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-11 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-6 | 95 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 141 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 142 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-5 | 293 | 320 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.446 | 293 | 321 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-9 | 297 | 320 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 298 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 299 | 320 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 337 | 365 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-6 | 337 | 364 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 339 | 368 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 339 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-5 | 341 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MELYGRNQGR NNGSQPEWPS SGGDTGLEES MWRLGLGGSE SYPERPGVPN CVYYMRTGFC 60 GYGGRCRYNH PRDRAAVVEA VRATGEYPER VGEPLCQYYL KTGTCKFGAS CKFHHPKHGV 120 GSLSQAPLNI YGYPLRPGEI DCSYYLKTGQ CKFGVTCKFH HPQPVGTSMP ASAPQFYQPV 180 QSPSLPTPEP YGSASTSLSV PRHPLLPGSY MPGTYAPVLL SPGVVSIPGW SPYSAPVSPA 240 LSPGAQPAVG ATSLYGVTPL SSSTPALARP YLSLPSSANP TSSSQKEQAF PERPGELECQ 300 YYMRTGDCKF GSSCRYHHPR DRVSSGTVLS HIGLPLRPGV QPCAFYLQNG HCKFGPTCKF 360 DHPMGTMRYS PSASSLIDMP VAPYPVGSLL ATLAPSSTSS ELRPELIPGS KRESFSSRMP 420 SSGNTSNSVG LIFSQPGSVS LSEVQLSSQI SSTLSGVRST RQGGEIRRSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018843804.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A2I4GIT2 | 0.0 | A0A2I4GIT2_JUGRE; zinc finger CCCH domain-containing protein 32-like | ||||
STRING | XP_010112757.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |