PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012588-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 620aa    MW: 69228.5 Da    PI: 5.8758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012588-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.83.5e-2961145187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r++m+ ++++++ k+plWe+vs+k++e g++rs+k+Ckek+en+ k++k++keg+ +++  + +t+++fdqlea
  WALNUT_00012588-RA  61 RWPRQETLALLKIRSDMDVAFKDASVKGPLWEDVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTGKS--DGKTYRFFDQLEA 145
                         8********************************************************************964..5557*******85 PP
2trihelix107.31.1e-33436521187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r++++ +++++  k+plWee+s++mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  WALNUT_00012588-RA 436 RWPKVEVQALIKLRTNLDAKYQDNGPKGPLWEEISAAMRKIGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 521
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.81854118IPR017877Myb-like domain
SMARTSM007170.001258120IPR001005SANT/Myb domain
CDDcd122038.47E-2460125No hitNo description
PfamPF138374.5E-1960146No hitNo description
SMARTSM007171.5E-4433495IPR001005SANT/Myb domain
CDDcd122038.93E-29435500No hitNo description
PfamPF138377.7E-23435522No hitNo description
Gene3DG3DSA:1.10.10.601.8E-4435492IPR009057Homeodomain-like
PROSITE profilePS500907.364435493IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MLGDSGSSVL GSSGTDAVAE HMAAAVPAHD SAEVGGVGSN SGEEDKGYKG DEGDRSYGGN  60
RWPRQETLAL LKIRSDMDVA FKDASVKGPL WEDVSRKLAE LGYHRSAKKC KEKFENVYKY  120
HKRTKEGRTG KSDGKTYRFF DQLEALENHP ASNIQSSTPV KPQQNIVPAT VASTETSVAM  180
RPLAPNPPIR LPQVTVTSVS HSTMNMSQGI NVAPAVNLTI PSFPLTNPTI LPPPPPPTTT  240
NPSHTATIPS SFPNLSTDLL SNSTSSSTSS DEELQVMRRK RKRKWKDFFE RLMKEVIQKQ  300
EELQRKFLEA IEKREHERMI REEAWRMQEM SRINREREIL AQERSIAAAK DAAVMTFLQK  360
ISEQQSPGQA FQYDLPQPHP AVQTAPPPAP QPALVVAVTQ PAPVSAPATV LPHTVTGFEI  420
QKFDNGENCT PTSSSRWPKV EVQALIKLRT NLDAKYQDNG PKGPLWEEIS AAMRKIGYNR  480
SAKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRERNKFE NPSPTQVLKP  540
GNTNMVPLMV RPEQQWPPQQ EHPSDDAAMD DVESEPMDQN QEEDDKEGDE EEEDEDEDED  600
GGGNFEIVAS KRPASMGAAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282RRKRKR
2277283RRKRKRK
3278283RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848175.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-149TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2I4GW980.0A0A2I4GW98_JUGRE; trihelix transcription factor GT-2-like
STRINGXP_006473053.10.0(Citrus sinensis)
STRINGXP_006434455.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-100Trihelix family protein