PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012456-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 445aa MW: 48464.4 Da PI: 8.1633 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.9 | 4.5e-10 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ WALNUT_00012456-RA 48 PGEPDCLYYLRTGLCGYGSNCRYHHP 73 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.4 | 8.8e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ WALNUT_00012456-RA 92 QPDCGYFLKTGTCKYGSTCKYHHPR 116 789********************96 PP | |||||||
3 | zf-CCCH | 32.3 | 1.7e-10 | 137 | 161 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rt Ck+G+ CkF+H++ WALNUT_00012456-RA 137 EKPCPYYMRTVSCKFGGACKFHHPQ 161 689********************97 PP | |||||||
4 | zf-CCCH | 39.6 | 8.9e-13 | 285 | 310 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ Ck++H++ WALNUT_00012456-RA 285 DQPECRYFMNTGTCKYGSDCKYHHPK 310 689*********************96 PP | |||||||
5 | zf-CCCH | 34.6 | 3.1e-11 | 327 | 352 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G CkyG++Ck+ H+ WALNUT_00012456-RA 327 PGQAICSYYSMYGVCKYGPTCKYDHP 352 5789*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.188 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-7 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-5 | 52 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.737 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-5 | 133 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.746 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0038 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-8 | 137 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-4 | 138 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-6 | 283 | 310 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.643 | 283 | 311 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-10 | 285 | 310 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-7 | 286 | 312 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-6 | 289 | 310 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 324 | 352 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 326 | 353 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 326 | 354 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-8 | 328 | 352 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 331 | 351 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MPENRQVQKN ATHNHSDNTI EEAFWRLKIN GNLEGGGAVQ SGPYPDRPGE PDCLYYLRTG 60 LCGYGSNCRY HHPAYVSQGA PYSVELPERV GQPDCGYFLK TGTCKYGSTC KYHHPRDRRG 120 AGPVSFNILG LPMRQEEKPC PYYMRTVSCK FGGACKFHHP QPASLGTLLP VAGHGAFGSM 180 GSTVVPSPGQ PYAGGLPAWS FPRVSYISSP RLPGPESYMP VVLPPPGIVS AQGWNTYMGN 240 MSPLSPNSST TLLSSNFIYN PKNLGELGSR GMLPATTPSL PERPDQPECR YFMNTGTCKY 300 GSDCKYHHPK ERIAQSVPIL PSLPLRPGQA ICSYYSMYGV CKYGPTCKYD HPVVAYPHNY 360 SLGLPNVPML DSSLISYPRS MSTAHSSESS PSKSSRFPDW VQKHDAASNK HEKSDTKTSE 420 DSAEEAGSSP HSVPSSAEPL PDQSG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018827029.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 3-like | ||||
TrEMBL | A0A2I4F5W1 | 0.0 | A0A2I4F5W1_JUGRE; zinc finger CCCH domain-containing protein 3-like | ||||
STRING | EMJ16552 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-111 | C3H family protein |