PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00012437-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 759aa MW: 85400.8 Da PI: 7.1359

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00012437-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.4	1.9e-112	386	757	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++c +av+++d++ a++lL+r++++++p gd +qRla+ f+ +L+arla+++s++yk l ++ts +++l+a++l+ ++P+ WALNUT_00012437-RA 386 LRTLLIHCSQAVAADDQRSANELLKRIRQHSTPFGDGNQRLAHIFVDGLEARLAGTGSQIYKGLVNKRTS---AADVLKAYHLYLAACPFR 473 6789**********************************************************999998...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+s+++ N++I ++ +++ +H+iDf+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g +e++eetg+rLa +Ae+++vpfe+++ WALNUT_00012437-RA 474 KISNFISNKTIKIEAVEATSLHVIDFGILYGFQWPTLIQRLSWRPGGPPKLRITGIDFPQPGfrPAERVEETGRRLATYAESFNVPFEYHA 564 *******9999999***************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +ak++e+++leeLr++++E l+Vn+ ++ +l des+s+e rd++L+lv++++P +v+ n++ F++r+ eal +ysalfd l WALNUT_00012437-RA 565 -IAKKWETIQLEELRIDKDELLVVNCLYRGRHLRDESLSVEGSRDAFLNLVRKINPVFFVHGVVSGAFNAPFFVTRLREALFHYSALFDIL 654 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e+ +pre++er+ +E+e++g+e+ nv+aceg er+er et+++W+ r +aG+ ++p++ + +k a + +r + + + ++e+ +l++gW WALNUT_00012437-RA 655 ETIVPREDRERMLIEKEIFGWEALNVIACEGWERVERPETYKQWQVRNLRAGLAQLPFDRELVKAAMAKVRSSYHKDFVIDEDGRWLLQGW 745 **********************************************************************888********** PP GRAS 363 kdrpLvsvSaWr 374 k+r+++++S+W+ WALNUT_00012437-RA 746 KGRTIFALSCWK 757 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.366	360	737	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-110	386	757	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MDPHPRGFSG STDAIQLGNQ SFSVLSNQNP VSGPRFGNSF FDHEYRGFHF HQPDQAPSHM 60 ASSSAGAQGE DYSEDCDFSD TVLGFISQIL MEEGVEDKSC MLQDSLELQA AEKSFYELLG 120 KKYPPSPIHR TNHINGNGES TDDNNHYVYH SNYASSTNSS SCFGDNSPIQ NHGEYTSQLQ 180 SLPRDIISQS SNIYLNSEMS SVDGLVGFPS GTFQVPDSNS KNQSVWQFRK GVEEASKFLP 240 PRSKLFVNLE GDGLLFQKPE AGRGKMEVKV EMEDESEDSP TGSRGKKHPH GGEDRDTEDE 300 RRSKQATVYI ESTLRSKMFD MVLLSSAGEG KAHLTALQET LQNGKSKNVQ QNGISKTVPR 360 NGKSKGSNGG RGRDKKQSRN KEVVDLRTLL IHCSQAVAAD DQRSANELLK RIRQHSTPFG 420 DGNQRLAHIF VDGLEARLAG TGSQIYKGLV NKRTSAADVL KAYHLYLAAC PFRKISNFIS 480 NKTIKIEAVE ATSLHVIDFG ILYGFQWPTL IQRLSWRPGG PPKLRITGID FPQPGFRPAE 540 RVEETGRRLA TYAESFNVPF EYHAIAKKWE TIQLEELRID KDELLVVNCL YRGRHLRDES 600 LSVEGSRDAF LNLVRKINPV FFVHGVVSGA FNAPFFVTRL REALFHYSAL FDILETIVPR 660 EDRERMLIEK EIFGWEALNV IACEGWERVE RPETYKQWQV RNLRAGLAQL PFDRELVKAA 720 MAKVRSSYHK DFVIDEDGRW LLQGWKGRTI FALSCWKPA

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MDPHPRGFSG STDAIQLGNQ SFSVLSNQNP VSGPRFGNSF FDHEYRGFHF HQPDQAPSHM  60
ASSSAGAQGE DYSEDCDFSD TVLGFISQIL MEEGVEDKSC MLQDSLELQA AEKSFYELLG  120
KKYPPSPIHR TNHINGNGES TDDNNHYVYH SNYASSTNSS SCFGDNSPIQ NHGEYTSQLQ  180
SLPRDIISQS SNIYLNSEMS SVDGLVGFPS GTFQVPDSNS KNQSVWQFRK GVEEASKFLP  240
PRSKLFVNLE GDGLLFQKPE AGRGKMEVKV EMEDESEDSP TGSRGKKHPH GGEDRDTEDE  300
RRSKQATVYI ESTLRSKMFD MVLLSSAGEG KAHLTALQET LQNGKSKNVQ QNGISKTVPR  360
NGKSKGSNGG RGRDKKQSRN KEVVDLRTLL IHCSQAVAAD DQRSANELLK RIRQHSTPFG  420
DGNQRLAHIF VDGLEARLAG TGSQIYKGLV NKRTSAADVL KAYHLYLAAC PFRKISNFIS  480
NKTIKIEAVE ATSLHVIDFG ILYGFQWPTL IQRLSWRPGG PPKLRITGID FPQPGFRPAE  540
RVEETGRRLA TYAESFNVPF EYHAIAKKWE TIQLEELRID KDELLVVNCL YRGRHLRDES  600
LSVEGSRDAF LNLVRKINPV FFVHGVVSGA FNAPFFVTRL REALFHYSAL FDILETIVPR  660
EDRERMLIEK EIFGWEALNV IACEGWERVE RPETYKQWQV RNLRAGLAQL PFDRELVKAA  720
MAKVRSSYHK DFVIDEDGRW LLQGWKGRTI FALSCWKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-47	375	758	8	380	Protein SCARECROW
5b3h_A	7e-47	369	758	1	379	Protein SCARECROW
5b3h_D	7e-47	369	758	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836069.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2I4FWP1	0.0	A0A2I4FWP1_JUGRE; scarecrow-like protein 9
STRING	XP_006480839.1	0.0	(Citrus sinensis)
STRING	XP_006429104.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein