PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00012406-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 313aa MW: 34042 Da PI: 9.8039

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00012406-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5e-39	75	133	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + lkcprC+stntkfCy+nny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+r+nkk++ WALNUT_00012406-RA 75 APLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRRNKKNK 133 6789****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	56	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	76	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.683	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MIISRTMVFS SVPVYLDPHN WHQQPNHQQG SDSQNVPQLP PPTHHAGGHG AAGSLRPGSM 60 ADRARLSKIP HPETAPLKCP RCESTNTKFC YFNNYNLSQP RHFCKTCRRY WTKGGALRNV 120 PVGGGCRRNK KNKSNRAKPP AAGERQSGSN SSNNATPSAC TSELIGHFPQ QSPPLPFMSS 180 FQNFTRYGMG NIGLNFSDIQ AQTDLGYQIG SSSGGSSTIL SSGVDQWRFQ QIPFLGGFES 240 PTGLYPIQSE GVEATLAGDN EPRIMMSSSR VSQLPPVMKM EERQGKNPSG LNWGGNSWTD 300 LSGLHSSSTG HLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836024.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A2I4FWJ7	0.0	A0A2I4FWJ7_JUGRE; dof zinc finger protein DOF3.6-like
STRING	VIT_06s0004g04520.t01	1e-110	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	7e-43	OBF-binding protein 3