PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012385-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C2H2 | ||||||||
Protein Properties | Length: 163aa MW: 18031.8 Da PI: 10.8335 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00086 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H WALNUT_00012385-RA 47 FVCKTCNRQFPSFQALGGHRASH 69 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.25E-8 | 45 | 115 | No hit | No description |
Pfam | PF13912 | 1.8E-12 | 46 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.515 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.933 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-10 | 93 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MKRGREDGNE LETADMAANF LILLSRVGEI DATRNTRNST SSTARAFVCK TCNRQFPSFQ 60 ALGGHRASHK KPRLMAGDLF HRIPTSPVRP KSHECSVCGL EFAIGQALGG HMRRHRAAIS 120 HEGMVIKHAV QAKPVMKKSS SKRVLCLDLN LTPVENDLKL SSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835986.1 | 1e-119 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 1e-39 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A2I4FWG1 | 1e-118 | A0A2I4FWG1_JUGRE; zinc finger protein ZAT11-like | ||||
STRING | XP_009762518.1 | 7e-57 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 6e-42 | C2H2 family protein |