PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012380-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 263aa    MW: 30219.3 Da    PI: 5.9174
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012380-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd++l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
  WALNUT_00012380-RA 15 KGAWSPEEDDKLKAYVQRYGHWNWRELPKFAGLSRCGKSCRLRWMNYL 62
                        79******************99************************97 PP
2Myb_DNA-binding56.56.3e-1868113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T+eEde +++++++lG++ W+ Ia++++ gRt++++k++w+++l
  WALNUT_00012380-RA  68 RGNYTKEEDEVILKLHEELGNK-WSIIASKLP-GRTDNEIKNHWHTHL 113
                         899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1511062IPR017930Myb domain
SuperFamilySSF466892.29E-3112109IPR009057Homeodomain-like
SMARTSM007172.2E-121464IPR001005SANT/Myb domain
PfamPF002497.2E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-231669IPR009057Homeodomain-like
CDDcd001671.31E-91762No hitNo description
PROSITE profilePS5129426.85763117IPR017930Myb domain
SMARTSM007172.5E-1767115IPR001005SANT/Myb domain
PfamPF002497.0E-1668113IPR001005SANT/Myb domain
CDDcd001676.50E-1270113No hitNo description
Gene3DG3DSA:1.10.10.608.8E-2770116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVKSPYYDEL SGLKKGAWSP EEDDKLKAYV QRYGHWNWRE LPKFAGLSRC GKSCRLRWMN  60
YLQPDVKRGN YTKEEDEVIL KLHEELGNKW SIIASKLPGR TDNEIKNHWH THLKKRAKQN  120
VRKAEVKDRL LSEASHSEKS QINTDHSESE SHVPADYAPS HHILESSVLS QETECSSDFT  180
SSTSSPHDQI STGVNWAVDQ DSQLGLSETF DQFSGDFWTE PFVADNTFVP NYRPSPSLFD  240
GEFISPYASY HNNVSDLCWD LGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-281311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKRAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821928.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A2I4ERB10.0A0A2I4ERB1_JUGRE; transcription factor WER-like
STRINGPOPTR_0019s14130.11e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-56myb domain protein 15