PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012379-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 383aa    MW: 42606.1 Da    PI: 4.4758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012379-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.3e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
  WALNUT_00012379-RA 14 RGTWTPEEDGKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                        89******************99************************97 PP
2Myb_DNA-binding52.89.3e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ + eE+e ++++++ lG++ W++Ia+ ++ gRt++++k++w++ 
  WALNUT_00012379-RA  67 RGNYSREEEETIIKLHESLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111
                         8999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.028961IPR017930Myb domain
SuperFamilySSF466896.25E-2911108IPR009057Homeodomain-like
SMARTSM007177.9E-101363IPR001005SANT/Myb domain
PfamPF002492.8E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221568IPR009057Homeodomain-like
CDDcd001671.60E-81661No hitNo description
PROSITE profilePS5129425.65362116IPR017930Myb domain
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002493.5E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2569116IPR009057Homeodomain-like
CDDcd001678.27E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVRPPSGDKN GLKRGTWTPE EDGKLIAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY SREEEETIIK LHESLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKGLKKSS  120
DVPRQENNSS NNLSQLEKIQ KRTDPNNPLL YPTDTSTEII GRLPSSDPQP SSSRSSSITT  180
NTSVEPTISM VEDDNPTSTE ASAETSGNFW TQPFLTDNSY IACDFLAPFM GTEDLSPVVD  240
EFSCPYGLFE LEKHGANDLS VPLEKARKGE KEPNDPLLIC TAQIMDSSPS SPQPSSSELS  300
SMTKDSAVAS STNMVADDIV TSLEASAETT GDFWTEPFFD GNSYITSDFL APFTDSEYLS  360
PAFDEYLSGY GLYGEYEGVN MIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121145106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821927.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A2I4ERA40.0A0A2I4ERA4_JUGRE; myb-related protein Myb4-like
STRINGPOPTR_0013s14560.11e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-57myb domain protein 14