PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012311-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 473aa    MW: 52344.4 Da    PI: 7.7615
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012311-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.3e-40187263278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC+ dl  ak+yhr+h+vCe hsk+p+v+v  le+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  WALNUT_00012311-RA 187 CQVEGCNLDLLLAKDYHRKHRVCESHSKSPKVIVGSLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQP 263
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-31180248IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.821184261IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-37185266IPR004333Transcription factor, SBP-box
PfamPF031107.0E-30187260IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSSLLLMEWN EKSPSQWEWD NLLLCSARAA ENSKLQPTEW AMQGDQGINS GSFYSSGGGG  60
GSGGSGRVLR HASLSNSSKS ASADSYSIGE SKTSKLTFEA FGDFPDDYIS KKELARVDTN  120
GVSPILEPSS GSGEPLLSLK LGKQMYFEDA CVGSNTETSK FSTIPMTSAT TAKKFKSSCQ  180
STQVPHCQVE GCNLDLLLAK DYHRKHRVCE SHSKSPKVIV GSLERRFCQQ CSRFHGLSEF  240
DEKKRSCRRR LSDHNARRRK PQPEAVRLNP ARLSSSLYDG KQQMNLVFDR VPLGYSSAAD  300
SLTWEDMCSS KFTQTKDYLL KPAKARDTDI QLHLPGNDMP CAITTLHNDS SRLLPSKGTV  360
GLEEPMISAQ QDAEPDFRRA LSLLSNNSWG SRESKPAPHP HAIHATHSGM LQPAMQVTQG  420
MLHVSSDHWQ TQQASTDSRG HILTQPNNGS IHFQDFQLFR SPDEFGFYPN QLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-261872601184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242259KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836769.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018836770.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018836771.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018836772.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018836773.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018836774.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018836775.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLA0A2I4FYP40.0A0A2I4FYP4_JUGRE; squamosa promoter-binding-like protein 12
STRINGVIT_01s0010g03710.t011e-170(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-59squamosa promoter binding protein-like 2