PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012294-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YC | ||||||||
Protein Properties | Length: 142aa MW: 16094.3 Da PI: 7.6841 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 47.6 | 3.6e-15 | 4 | 91 | 11 | 97 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivp 97 e++t+ + e+P r+kki+k d+d++++ +ea l+s + elfi l+ +s a+ +krr +k i av++ + dfl+d p WALNUT_00012294-RA 4 EENTETIRPEFPTGRVKKIMKLDKDINKVNSEALFLVSCSAELFIRFLAEKSAEVAKGKKRRIMKLEHIRIAVQSHrPTNDFLLDSLP 91 6677777899************************************************************9998651689*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-19 | 7 | 77 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.7E-17 | 8 | 97 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-18 | 13 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MEEEENTETI RPEFPTGRVK KIMKLDKDIN KVNSEALFLV SCSAELFIRF LAEKSAEVAK 60 GKKRRIMKLE HIRIAVQSHR PTNDFLLDSL PLPAQPSDHP ITDQSHSRPA AEKPVPAGTR 120 RIDDFFNKSA NKSPSQIDNE ES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018836743.1 | 1e-100 | PREDICTED: DNA polymerase epsilon subunit C | ||||
TrEMBL | A0A2I4FYM4 | 1e-98 | A0A2I4FYM4_JUGRE; DNA polymerase epsilon subunit C | ||||
STRING | VIT_01s0010g03550.t01 | 3e-64 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 7e-51 | nuclear factor Y, subunit C13 |