PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012294-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YC
Protein Properties Length: 142aa    MW: 16094.3 Da    PI: 7.6841
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012294-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.63.6e-154911197
               NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivp 97
                        e++t+  + e+P  r+kki+k d+d++++ +ea  l+s + elfi  l+ +s   a+ +krr +k   i  av++   + dfl+d  p
  WALNUT_00012294-RA  4 EENTETIRPEFPTGRVKKIMKLDKDINKVNSEALFLVSCSAELFIRFLAEKSAEVAKGKKRRIMKLEHIRIAVQSHrPTNDFLLDSLP 91
                        6677777899************************************************************9998651689*****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-19777IPR009072Histone-fold
SuperFamilySSF471135.7E-17897IPR009072Histone-fold
PfamPF008082.1E-181376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEEEENTETI RPEFPTGRVK KIMKLDKDIN KVNSEALFLV SCSAELFIRF LAEKSAEVAK  60
GKKRRIMKLE HIRIAVQSHR PTNDFLLDSL PLPAQPSDHP ITDQSHSRPA AEKPVPAGTR  120
RIDDFFNKSA NKSPSQIDNE ES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836743.11e-100PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A2I4FYM41e-98A0A2I4FYM4_JUGRE; DNA polymerase epsilon subunit C
STRINGVIT_01s0010g03550.t013e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.17e-51nuclear factor Y, subunit C13