PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012175-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 277aa    MW: 31267.9 Da    PI: 9.3733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012175-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.3e-1834124198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+ +ps+++  + l+lp kf++++g++   s+  +l+ ++g +W+v l  ++ ++++++++GW++Fv+   +++g f+vFk++g+s+f 
  WALNUT_00012175-RA  34 FFKIILPSSMHDMK-LSLPEKFVRQFGYE--LSTVAVLTVPNGCVWRVGL--ERADKKIWFREGWQDFVEYLSIQQGYFLVFKYKGNSSF- 118
                         89999999999998.***********987..888999999**********..**************************************. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v +f+
  WALNUT_00012175-RA 119 -HVLIFD 124
                         .999997 PP

2B348.81.3e-151922671593
                         -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                  B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                         +  lp +fa+++  g+k      ++l+ ++gr+W   +  r+ +g+     ++kGWk F+k+n+L+egD++ F+l++r  ++  v
  WALNUT_00012175-RA 192 NALLPTEFAKKYviGLK-----IVKLQASDGRQWHCLV--RGVKGAalpLRISKGWKTFCKDNQLNEGDICAFELIRRkLDA--V 267
                         4589********66555.....7***************..7777776789999**********************9974444..4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-2527126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2430125IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-2033124No hitNo description
PROSITE profilePS5086313.19733126IPR003340B3 DNA binding domain
PfamPF023623.6E-1534124IPR003340B3 DNA binding domain
SMARTSM010192.7E-1634126IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941178276IPR003340B3 DNA binding domain
SMARTSM010190.0034181274IPR003340B3 DNA binding domain
PfamPF023623.1E-13191268IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-13193265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-14194271IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-12195271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPAKSKTRRT GVVSNGNRDH RPSSSQLSCR PSHFFKIILP SSMHDMKLSL PEKFVRQFGY  60
ELSTVAVLTV PNGCVWRVGL ERADKKIWFR EGWQDFVEYL SIQQGYFLVF KYKGNSSFHV  120
LIFDMTATEI HYPSNGKDFK LKDLVDITEC DGVKDSRQGG NAIENETPTA DELSAKHGED  180
VEMNAVPPRG GNALLPTEFA KKYVIGLKIV KLQASDGRQW HCLVRGVKGA ALPLRISKGW  240
KTFCKDNQLN EGDICAFELI RRKLDAVLKV SKIMQDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828948.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2I4FBE50.0A0A2I4FBE5_JUGRE; B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-34B3 family protein