PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012175-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | B3 | ||||||||
Protein Properties | Length: 277aa MW: 31267.9 Da PI: 9.3733 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.1 | 3.3e-18 | 34 | 124 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk+ +ps+++ + l+lp kf++++g++ s+ +l+ ++g +W+v l ++ ++++++++GW++Fv+ +++g f+vFk++g+s+f WALNUT_00012175-RA 34 FFKIILPSSMHDMK-LSLPEKFVRQFGYE--LSTVAVLTVPNGCVWRVGL--ERADKKIWFREGWQDFVEYLSIQQGYFLVFKYKGNSSF- 118 89999999999998.***********987..888999999**********..**************************************. PP .EEEEE- CS B3 92 lvvkvfr 98 +v +f+ WALNUT_00012175-RA 119 -HVLIFD 124 .999997 PP | |||||||
2 | B3 | 48.8 | 1.3e-15 | 192 | 267 | 15 | 93 |
-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 + lp +fa+++ g+k ++l+ ++gr+W + r+ +g+ ++kGWk F+k+n+L+egD++ F+l++r ++ v WALNUT_00012175-RA 192 NALLPTEFAKKYviGLK-----IVKLQASDGRQWHCLV--RGVKGAalpLRISKGWKTFCKDNQLNEGDICAFELIRRkLDA--V 267 4589********66555.....7***************..7777776789999**********************9974444..4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-25 | 27 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-24 | 30 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.27E-20 | 33 | 124 | No hit | No description |
PROSITE profile | PS50863 | 13.197 | 33 | 126 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-15 | 34 | 124 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-16 | 34 | 126 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.941 | 178 | 276 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0034 | 181 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-13 | 191 | 268 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-13 | 193 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-14 | 194 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-12 | 195 | 271 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MPAKSKTRRT GVVSNGNRDH RPSSSQLSCR PSHFFKIILP SSMHDMKLSL PEKFVRQFGY 60 ELSTVAVLTV PNGCVWRVGL ERADKKIWFR EGWQDFVEYL SIQQGYFLVF KYKGNSSFHV 120 LIFDMTATEI HYPSNGKDFK LKDLVDITEC DGVKDSRQGG NAIENETPTA DELSAKHGED 180 VEMNAVPPRG GNALLPTEFA KKYVIGLKIV KLQASDGRQW HCLVRGVKGA ALPLRISKGW 240 KTFCKDNQLN EGDICAFELI RRKLDAVLKV SKIMQDD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018828948.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A2I4FBE5 | 0.0 | A0A2I4FBE5_JUGRE; B3 domain-containing transcription factor VRN1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-34 | B3 family protein |