PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00012013-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 379aa MW: 42726.8 Da PI: 4.751

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00012013-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	215	258	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL ++eY+k+L WALNUT_00012013-RA 215 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIEYMKEL 258 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.389	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-15	213	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-12	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	215	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.87E-5	216	262	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-15	216	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	1.09E-4	305	346	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MIKYKPIVLC SYIFFPLVQH HIIKVLTLPR EAPTRTNTQT QRARDRRDME LNEHGFLEEL 60 LALRVDTSGT IPTPMNEFVS NGWTFDYFEQ NPAMVFPNSC CEGFSPQLEQ IVDTSSYTLN 120 EVYCPFGNAF SASQLTDSSL NTLDTPPFPM QEDYPFSMME EELGILGDEI HNLEVQASCK 180 AEPIQSPEVP VINIGNCQEV KNPAKKLQGQ PSKNLMAERR RRKRLNDRLS MLRSIVPKIS 240 KMDRTSILGD TIEYMKELLE KINSLQLEID QGSSNITGIF KNVKPNEVLV RNSPKFDVER 300 GNVDTRIEIC CAGKPGLLLS TVNTLEALGL EIQQCVISCF NDFAMQASCS EDMDQGTLLS 360 SEDIKQTLFR NAGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MIKYKPIVLC SYIFFPLVQH HIIKVLTLPR EAPTRTNTQT QRARDRRDME LNEHGFLEEL  60
LALRVDTSGT IPTPMNEFVS NGWTFDYFEQ NPAMVFPNSC CEGFSPQLEQ IVDTSSYTLN  120
EVYCPFGNAF SASQLTDSSL NTLDTPPFPM QEDYPFSMME EELGILGDEI HNLEVQASCK  180
AEPIQSPEVP VINIGNCQEV KNPAKKLQGQ PSKNLMAERR RRKRLNDRLS MLRSIVPKIS  240
KMDRTSILGD TIEYMKELLE KINSLQLEID QGSSNITGIF KNVKPNEVLV RNSPKFDVER  300
GNVDTRIEIC CAGKPGLLLS TVNTLEALGL EIQQCVISCF NDFAMQASCS EDMDQGTLLS  360
SEDIKQTLFR NAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	224	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821081.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	3e-79	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A2I4ENV6	0.0	A0A2I4ENV6_JUGRE; transcription factor bHLH93-like
STRING	EOY15558	1e-169	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-81	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]