PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012011-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 260aa MW: 28831 Da PI: 9.3983 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.6e-38 | 18 | 77 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+st tkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk WALNUT_00012011-RA 18 PQEHLNCPRCNSTITKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKY 77 68999****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-26 | 17 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 20 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.593 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEGEAPNTRP LTERRTRPQE HLNCPRCNST ITKFCYYNNY SLTQPRYFCK TCRRYWTEGG 60 SLRNVPVGGG SRKNKKYTPA ASTSNSKIPD LNPQSLSQIS SQNLINGAKK GHDLNLAFQT 120 YERYHGETQY VEVMPKIESD NRNQQVAGSA SSSTPLSALE LLRTGIASRG SNTFIPPPMI 180 DSSTLYSSGF PFQEFKPTPG TFSVDGVESR PYGVQENNGG KLLFPFGESK QISTTNEGEQ 240 KKGQGSSTGY WSSMLNGGYW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT202286 | 2e-43 | KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018818339.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like | ||||
Swissprot | Q43385 | 9e-58 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A2I4EG13 | 0.0 | A0A2I4EG13_JUGRE; dof zinc finger protein DOF2.5-like | ||||
STRING | EOX95655 | 1e-105 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 2e-63 | Dof family protein |