PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012010-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 311aa    MW: 35126.6 Da    PI: 9.0839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012010-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  WALNUT_00012010-RA 14 RGPWTPREDTLLTKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding53.45.8e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ Tt+Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  WALNUT_00012010-RA  67 RGNITTDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                         7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.392961IPR017930Myb domain
SuperFamilySSF466891.18E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002493.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-231568IPR009057Homeodomain-like
CDDcd001671.78E-91661No hitNo description
PROSITE profilePS5129426.02862116IPR017930Myb domain
SMARTSM007177.8E-1666114IPR001005SANT/Myb domain
PfamPF002495.0E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2569116IPR009057Homeodomain-like
CDDcd001673.30E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVRAPCCSKV GLHRGPWTPR EDTLLTKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPNIKRGNI TTDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLLITG  120
RGNTDLDTNK KSTEPGHELK RKSSKNSNTN KNNKSNNRKM KNKGIANIES EKQKVHLPKP  180
TRIASFPIPR NESFDCSTIS GSSGQEKSED ILCFGSKVES IPWCHLEGVA WNGFKDGRDQ  240
ENGVGFLIGA GDHHHHGLVN NGSDFDQCQS AHIPTGDHNS LEKLYEEYLE LLKTEESQVE  300
LDSFAESLLL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347036e-32KM034703.1 Jatropha curcas clone JcMYB083 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818389.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A2I4EG580.0A0A2I4EG58_JUGRE; myb-related protein 308-like
STRINGEOX956611e-129(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-64myb domain protein 5