PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012001-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARF
Protein Properties Length: 661aa    MW: 73471.8 Da    PI: 6.3035
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012001-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.4e-2498198198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW++Fv +++L +gD +vF  
  WALNUT_00012001-RA  98 FCKILTASDTSTHGGFSVLRKHATEClpqldmtQ--ATPTQELVAKDLHGFEWKFKHIFRGQPRRHLLTTGWSNFVTSKRLVAGDAFVFL- 185
                         99**************************999543..445569************************************************. PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                          + +++el+v+v+r
  WALNUT_00012001-RA 186 -RGEDGELRVGVRR 198
                         .4499*******98 PP
2Auxin_resp94.32e-31224303183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha+ t++ F v+Y+Pr+  s+F+++v+k+++a+++ +svG Rfkm+fe+eds+err+sGt+v v+ ++  +W++SkWrsLk
  WALNUT_00012001-RA 224 ASHAVLTHTLFVVYYKPRT--SQFIISVNKYLEAINNGFSVGIRFKMRFEGEDSPERRFSGTIVRVEGISA-EWSDSKWRSLK 303
                         689999************6..9**********************************************665.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.94E-4189227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-4090213IPR015300DNA-binding pseudobarrel domain
CDDcd100178.31E-2196198No hitNo description
SMARTSM010192.8E-2298200IPR003340B3 DNA binding domain
PROSITE profilePS5086312.16798200IPR003340B3 DNA binding domain
PfamPF023625.0E-2298198IPR003340B3 DNA binding domain
PfamPF065071.7E-29224303IPR010525Auxin response factor
PfamPF023093.6E-7524581IPR033389AUX/IAA domain
SuperFamilySSF542772.55E-12539621No hitNo description
PROSITE profilePS5174524.537545637IPR000270PB1 domain
PfamPF023094.1E-5589634IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MVHLEESPRG SSISHAETGS GVDDLYTELW KLCAGPLVDV PRPGERVFYF PQGHMEQAEQ  60
ETDEVYAQIT LHPELDQSEP KSPDICPPEP PRQTVHSFCK ILTASDTSTH GGFSVLRKHA  120
TECLPQLDMT QATPTQELVA KDLHGFEWKF KHIFRGQPRR HLLTTGWSNF VTSKRLVAGD  180
AFVFLRGEDG ELRVGVRRLA RQQSPMPSSV ISSQSMHLGV LATASHAVLT HTLFVVYYKP  240
RTSQFIISVN KYLEAINNGF SVGIRFKMRF EGEDSPERRF SGTIVRVEGI SAEWSDSKWR  300
SLKIQWDEPA TIQRPERVSP WEIEPFVASA SMNLAQPVVK SKRPRPVDIP SSEITTNSAA  360
SAIWYHGSTQ SHELTQLSAA AEVQSCETSV AWPSRLKEIN NNRSRVRAES TWSSSPHVNI  420
SLDLFSDSLE DNKTVTLQST LSDFLSPVLS RLSNGLANDH VEKEIKSETS LGCRLFGIDL  480
TKNSETIALA TMVSGGAKGQ SPTAASIVNT ACKPDVKSSN EHKQLIPDES LKETQSKQGS  540
TLSTRTRTKV QMQGVAVGRA VDLTVLKGYN DLIDELEKMF EIKGELCPQN KWAVVFTDDE  600
NDMMLVGDDP WPEFCKMARK IYIYSSEEVK KMTTRCKLTA SLLEGEGTIG STDSEHRAET  660
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1542332617355Auxin response factor 1
4ldw_A1e-1542332617355Auxin response factor 1
4ldw_B1e-1542332617355Auxin response factor 1
4ldx_A1e-1542332617355Auxin response factor 1
4ldx_B1e-1542332617355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341345KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818379.10.0PREDICTED: auxin response factor 18
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A2I4EG520.0A0A2I4EG52_JUGRE; Auxin response factor
STRINGEOX956790.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]