PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00011735-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | SRS | ||||||||
Protein Properties | Length: 346aa MW: 37081.9 Da PI: 7.7527 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 227.5 | 2.5e-70 | 118 | 269 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsst 89 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa++rrerqqqlaa+++++++++ + ++kr+r ++ +s+l++t WALNUT_00011735-RA 118 GGGVSCQDCGNQAKKDCVHMRCRTCCKSRGFECQTHVKSTWVPASRRRERQQQLAAMQQQQQQHQqlqlHGVNPKRQR--ENPGSSSLACT 206 5789***************************************************99998888775643344444444..45788899999 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l+++ + le+ ++P+ev+s+avfrc+rvss+d++++++aYq+av+igGhvfkG+LydqG+e+ WALNUT_00011735-RA 207 RLPTSA--SGLEVGHFPAEVNSPAVFRCIRVSSIDEADDQYAYQAAVNIGGHVFKGTLYDQGPET 269 998876..5699999************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.8E-67 | 120 | 268 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.8E-28 | 122 | 164 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-26 | 219 | 267 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAGFFSLGGG RGTTSSSQDD RHRQSSNNPP TEIPQESLFW YKNDDPGYKG FELWQQQEQV 60 LLQHQQQQQQ RHHQQLQQDL YASAAGLGVG PSRSSINVSD ESPSRSAFMM MRSAGGGGGG 120 VSCQDCGNQA KKDCVHMRCR TCCKSRGFEC QTHVKSTWVP ASRRRERQQQ LAAMQQQQQQ 180 HQQLQLHGVN PKRQRENPGS SSLACTRLPT SASGLEVGHF PAEVNSPAVF RCIRVSSIDE 240 ADDQYAYQAA VNIGGHVFKG TLYDQGPETN YSIAGESSSG GGGGVQPLNL IAGVTNTSAT 300 TASGGGGGGA DVGSSAMTLL DPPSLYPGAP LNTFMAGTQF FPPPRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018824002.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | K4B6C9 | 9e-98 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
Swissprot | Q9SD40 | 2e-97 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A2I4EX85 | 0.0 | A0A2I4EX85_JUGRE; protein SHI RELATED SEQUENCE 1-like | ||||
STRING | EOX90942 | 1e-151 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 8e-70 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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