PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011735-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SRS
Protein Properties Length: 346aa    MW: 37081.9 Da    PI: 7.7527
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011735-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.52.5e-701182693154
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsst 89 
                          g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa++rrerqqqlaa+++++++++    +  ++kr+r  ++  +s+l++t
  WALNUT_00011735-RA 118 GGGVSCQDCGNQAKKDCVHMRCRTCCKSRGFECQTHVKSTWVPASRRRERQQQLAAMQQQQQQHQqlqlHGVNPKRQR--ENPGSSSLACT 206
                         5789***************************************************99998888775643344444444..45788899999 PP

              DUF702  90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         +l+++   + le+ ++P+ev+s+avfrc+rvss+d++++++aYq+av+igGhvfkG+LydqG+e+
  WALNUT_00011735-RA 207 RLPTSA--SGLEVGHFPAEVNSPAVFRCIRVSSIDEADDQYAYQAAVNIGGHVFKGTLYDQGPET 269
                         998876..5699999************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-67120268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.8E-28122164IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-26219267IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGFFSLGGG RGTTSSSQDD RHRQSSNNPP TEIPQESLFW YKNDDPGYKG FELWQQQEQV  60
LLQHQQQQQQ RHHQQLQQDL YASAAGLGVG PSRSSINVSD ESPSRSAFMM MRSAGGGGGG  120
VSCQDCGNQA KKDCVHMRCR TCCKSRGFEC QTHVKSTWVP ASRRRERQQQ LAAMQQQQQQ  180
HQQLQLHGVN PKRQRENPGS SSLACTRLPT SASGLEVGHF PAEVNSPAVF RCIRVSSIDE  240
ADDQYAYQAA VNIGGHVFKG TLYDQGPETN YSIAGESSSG GGGGVQPLNL IAGVTNTSAT  300
TASGGGGGGA DVGSSAMTLL DPPSLYPGAP LNTFMAGTQF FPPPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824002.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotK4B6C99e-98EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
SwissprotQ9SD402e-97SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A2I4EX850.0A0A2I4EX85_JUGRE; protein SHI RELATED SEQUENCE 1-like
STRINGEOX909421e-151(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.18e-70Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]