PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00011679-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 344aa MW: 39027.8 Da PI: 5.2625

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00011679-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.7	2.6e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv +yLk+kve+ ++el evi+ vd+yk++Pw+Lp k + ++ ew+fF++rd+ky++g+r+nratksgyWkatgkd WALNUT_00011679-RA 6 LPPGFRFHPTDEELVGYYLKRKVERLPIEL-EVIPVVDLYKCDPWELPeKsFLPIRDMEWFFFCPRDRKYPNGTRTNRATKSGYWKATGKD 95 79**************************.99**********94344455899***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v++ +++++g +ktLvfy+grap g +tdWvmheyrl WALNUT_00011679-RA 96 KKVVC-QTNAMGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133 *.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-62	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.604	6	156	IPR003441	NAC domain
Pfam	PF02365	3.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MGGATLPPGF RFHPTDEELV GYYLKRKVER LPIELEVIPV VDLYKCDPWE LPEKSFLPIR 60 DMEWFFFCPR DRKYPNGTRT NRATKSGYWK ATGKDKKVVC QTNAMGYRKT LVFYRGRAPL 120 GDRTDWVMHE YRLCDDLWQE SPSFQGAFAL CRVVKKNEHT LKMNDHGEPK AKRAGSSLSN 180 GDHTSMTIPN VPISIPNEIL SRASYPCNES QYSSPITSPY EVLPMAESEP ALMKTSPTNF 240 WVPPELILDS SKDYPQVQEA ASEYPQYQNP SSSTSWPPYE HAEIASSSSY SNFNGEVEVS 300 DDLTGYGCMF PYSGHANYMG LFGSEDVTCE GYDQSGSLIY PHLF

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MGGATLPPGF RFHPTDEELV GYYLKRKVER LPIELEVIPV VDLYKCDPWE LPEKSFLPIR  60
DMEWFFFCPR DRKYPNGTRT NRATKSGYWK ATGKDKKVVC QTNAMGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDLWQE SPSFQGAFAL CRVVKKNEHT LKMNDHGEPK AKRAGSSLSN  180
GDHTSMTIPN VPISIPNEIL SRASYPCNES QYSSPITSPY EVLPMAESEP ALMKTSPTNF  240
WVPPELILDS SKDYPQVQEA ASEYPQYQNP SSSTSWPPYE HAEIASSSSY SNFNGEVEVS  300
DDLTGYGCMF PYSGHANYMG LFGSEDVTCE GYDQSGSLIY PHLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-49	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-49	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-49	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-49	5	162	16	171	NO APICAL MERISTEM PROTEIN
4dul_A	4e-49	5	162	16	171	NAC domain-containing protein 19
4dul_B	4e-49	5	162	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018842618.1	0.0	PREDICTED: NAC domain-containing protein 72-like
Swissprot	O49697	1e-100	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A2I4GFE1	0.0	A0A2I4GFE1_JUGRE; NAC domain-containing protein 72-like
STRING	XP_006485436.1	1e-168	(Citrus sinensis)
STRING	XP_006436748.1	1e-168	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6722	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-103	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]