PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011639-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 214aa    MW: 24737.1 Da    PI: 9.6532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011639-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.11.3e-203279148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +l+++++ +G+++WktIa++ g++R++k+c++rw++yl
  WALNUT_00011639-RA 32 KGAWTAEEDRRLAEVIASHGPKRWKTIAAKAGLNRCGKSCRLRWLNYL 79
                        79********************************************97 PP
2Myb_DNA-binding50.64.4e-1685130148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  WALNUT_00011639-RA  85 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 130
                         78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.7992783IPR017930Myb domain
SMARTSM007172.0E-163181IPR001005SANT/Myb domain
SuperFamilySSF466892.77E-2931126IPR009057Homeodomain-like
PfamPF002495.1E-193279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-243386IPR009057Homeodomain-like
CDDcd001675.37E-113479No hitNo description
PROSITE profilePS5129420.91884134IPR017930Myb domain
SMARTSM007171.9E-1584132IPR001005SANT/Myb domain
PfamPF002491.8E-1485130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2587135IPR009057Homeodomain-like
CDDcd001671.09E-989130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVMAPMTDKS IKREVNQMKA KNNVSIKKEA NKGAWTAEED RRLAEVIASH GPKRWKTIAA  60
KAGLNRCGKS CRLRWLNYLR PNIKRGNISD QEEDLILRLH KLLGNRWSLI AGRLPGRTDN  120
EIKNYWNSHL SKKIKQEKQR GAATREDCNA RENRAEEKVN VAMRGDEENS YKGLEDSEIN  180
FDVDEFFDFS NESPLNLEWI SKFLELDKGF SDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-312913424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835066.11e-156PREDICTED: transcription factor WER-like isoform X2
SwissprotQ962761e-52MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A2I4FTU11e-155A0A2I4FTU1_JUGRE; transcription factor WER-like isoform X2
STRINGEOY272391e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.14e-55myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]