PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011489-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Dof
Protein Properties Length: 220aa    MW: 23703 Da    PI: 8.1133
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011489-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.24.9e-401676262
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        ++++lkcprCds+ntkfCy+nny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+ 
  WALNUT_00011489-RA 16 EQEQLKCPRCDSSNTKFCYFNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKNTKRA 76
                        57899****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-291171IPR003851Zinc finger, Dof-type
PfamPF027015.5E-331874IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4222074IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MQDPAIFQPT QPHFPEQEQL KCPRCDSSNT KFCYFNNYNL SQPRHFCKNC RRYWTKGGAL  60
RNIPVGGGTR KNTKRASNPK RSSSSSASSS TTSNSVVQNP GPENDPNRLY GAAVGDQDRG  120
ILDISGSFSS LLTSNGQFGS LLEGLNPNGS GVKMVLGDFA ETLNTGHVLD TSSARDPGMD  180
MKRDSNSESY VGLQGGDSSC WTGGNGWPDL AIYTPGSSFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843343.11e-163PREDICTED: dof zinc finger protein DOF3.1
SwissprotO821557e-48DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A2I4GHG81e-161A0A2I4GHG8_JUGRE; dof zinc finger protein DOF3.1
STRINGXP_008228327.12e-99(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-44DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]