PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00011473-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 438aa MW: 48425.1 Da PI: 7.2844

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00011473-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.4e-08	364	404	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L WALNUT_00011473-RA 364 ARQRRERISEKIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 404 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.193	355	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	360	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-10	361	409	No hit	No description
SMART	SM00353	9.3E-13	361	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-12	363	418	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-5	364	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEGLGWDGSL LVTNTPSLWS NQQHVEESMV LSNSNSSVLI NPIQALQEAQ TSHVLASSDK 60 VGVMFQPLTL VSDSMKFVSN TNLSDRQEAM RLAAEAMVAK PGAGTSLGED LTSELCPSPL 120 MINGHYITNP LSGFWSDFYM SKQSQLLNGL QNGKECLLSD TNNKDTSAEH DGIPTMFSNC 180 RNLWNFGSGS TAISSGESEN NASNARNKDM HCSVNELEER VSKSSSEFYG YHEKFRESKP 240 VSTKRSSSDQ RELKAGQNYH SSYLLQTDSA TTRGGFKLIS ENPPKSKKSR SEKRPSTSNI 300 NFQQSGSSVS SSIVEPDPEA ITQMKEMIYR AAAFRPVVNL GLEVVEKPKR KNVRISTDPQ 360 TVAARQRRER ISEKIRVLQR LVPGGSKMDT ASMLDEAANY LKFLRSQVKA LENLSHQLDS 420 MNYPPTDIAF SFHPSFPN

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEGLGWDGSL LVTNTPSLWS NQQHVEESMV LSNSNSSVLI NPIQALQEAQ TSHVLASSDK  60
VGVMFQPLTL VSDSMKFVSN TNLSDRQEAM RLAAEAMVAK PGAGTSLGED LTSELCPSPL  120
MINGHYITNP LSGFWSDFYM SKQSQLLNGL QNGKECLLSD TNNKDTSAEH DGIPTMFSNC  180
RNLWNFGSGS TAISSGESEN NASNARNKDM HCSVNELEER VSKSSSEFYG YHEKFRESKP  240
VSTKRSSSDQ RELKAGQNYH SSYLLQTDSA TTRGGFKLIS ENPPKSKKSR SEKRPSTSNI  300
NFQQSGSSVS SSIVEPDPEA ITQMKEMIYR AAAFRPVVNL GLEVVEKPKR KNVRISTDPQ  360
TVAARQRRER ISEKIRVLQR LVPGGSKMDT ASMLDEAANY LKFLRSQVKA LENLSHQLDS  420
MNYPPTDIAF SFHPSFPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	364	369	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018843297.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	2e-79	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2I4GHC5	0.0	A0A2I4GHC5_JUGRE; transcription factor bHLH87-like
STRING	VIT_09s0002g02700.t01	1e-150	(Vitis vinifera)
STRING	EOY27004	1e-150	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	4e-71	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]