PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011204-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 314aa    MW: 36135 Da    PI: 10.2817
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011204-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.38e-2019109199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+     ++s+++++p  f+++++g    +k+ +l d +g+sW+v l  ++  +r  ++ GW++F++++ L+ gDf++Fk++++  f 
  WALNUT_00011204-RA  19 FFKVF--LPFTSSHQMSIPPAFIKHFNGT--IPKKAILIDHTGNSWTVGL--EQINRRLCFKYGWQQFASDHSLEFGDFIIFKYTKSCMF- 102
                         78888..889999**********777766..7889***************..999999**************************987777. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +vk+f+k
  WALNUT_00011204-RA 103 -KVKIFNK 109
                         .9999987 PP
2B335.61.6e-112032861295
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE..EEE CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sefelvvk 95 
                          ++  +l k+ +e++++k   ++++++ +++ +++ vk+ ++k++ r++++kGW+ F++ n+++ +D +vF+++ gr   + e++v+
  WALNUT_00011204-RA 203 DKNFTCLHKSVVEAFNIK--LNQDMVICSPNEEKFPVKIVIWKSG-RIIISKGWSAFARKNNVQPKDQCVFEFVlGRgnICSEMRVQ 286
                         445567888889888766..6668999************999986.889***********************653321244555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2412112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-2412112IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-2017108No hitNo description
PROSITE profilePS5086313.50717110IPR003340B3 DNA binding domain
SMARTSM010191.2E-1519110IPR003340B3 DNA binding domain
PfamPF023625.1E-1719109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-15189289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-14189287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.515192291IPR003340B3 DNA binding domain
CDDcd100171.97E-10193288No hitNo description
SMARTSM010195.7E-5195283IPR003340B3 DNA binding domain
PfamPF023622.0E-9203275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAMSRVRRQP SFPDDGPEFF KVFLPFTSSH QMSIPPAFIK HFNGTIPKKA ILIDHTGNSW  60
TVGLEQINRR LCFKYGWQQF ASDHSLEFGD FIIFKYTKSC MFKVKIFNKT GCMKYEAEAT  120
GKTIPFVTFE EDTIAERVCG RLTRAGKRKL LEICLEKNEE AGGLSKAGRQ TSRTIVEQKT  180
SIDVARFVTP KNPYCVVSIS NRDKNFTCLH KSVVEAFNIK LNQDMVICSP NEEKFPVKIV  240
IWKSGRIIIS KGWSAFARKN NVQPKDQCVF EFVLGRGNIC SEMRVQILQG KARLEELSKH  300
RYQYRKKKAW FANL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830210.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2I4FEY40.0A0A2I4FEY4_JUGRE; putative B3 domain-containing protein Os03g0621600
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-38B3 family protein