PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011168-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 704aa    MW: 78692.2 Da    PI: 6.3205
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011168-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3421e-1043267012373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL+ cA+a+s+gd+e a++lL+++++++sp gd  qRla++f+++L+arla+++s++    ++  +++ + se l+a+kl   v+P+ +
  WALNUT_00011168-RA 326 NTLLILCAQAISAGDNETANQLLKQVRKNSSPLGDGSQRLAHFFANGLEARLAGTGSGIQLFYTSLVSRKISASEILSAYKLHLSVCPFKR 416
                         679***************************************************999999888888888888******************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         +s + +N +I + +e+++++H+i f+i++GlQ + L+q+L++Rp+gpp+lRiTg++ p++g   +e++eetg+rLak++e+ +vpfe++ +
  WALNUT_00011168-RA 417 ISLIFTNMMIFKVAEKATTLHVIVFGIGYGLQIALLIQKLSQRPGGPPKLRITGIELPQPGlrPAERVEETGRRLAKYCEQYNVPFEYHGI 507
                         ******************************************************************************************* PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         +++++e++++e+L+++++E++aVn+ ++ ++llde+v++e  +r++vLkl+++++P ++v++  +  +n++ F++rf eal ++sal+d +
  WALNUT_00011168-RA 508 ASQKWETIRIEDLKIDRNEMVAVNCLYRFKNLLDETVEVETsPRNAVLKLIRRINPGIFVHSIVNGAYNAPFFVTRFREALFHFSALYDIF 598
                         999************************************9889************************************************ PP

                GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         ++++p+ +  er + Ere+ gre++nv+ace+ +r+er et+++W+ r ++aGF+ +pl+++  +  ++ +++ + + + ++e+++++++g
  WALNUT_00011168-RA 599 DVTVPPGNqLERLMFEREFYGREAMNVIACEELQRVERPETYKQWQVRTMRAGFRLLPLDQDLLNGFRSRMKEWYHKDFVLDEDNHWMLQG 689
                         *****99978*****************************************************************888************* PP

                GRAS 362 WkdrpLvsvSaW 373
                         Wk+r ++++S+W
  WALNUT_00011168-RA 690 WKGRIVFACSCW 701
                         ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.261299682IPR005202Transcription factor GRAS
PfamPF035143.6E-102326701IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MGPGGEPDVP SAAAASSLSP PSMGTSLGGG SSADEREYSE TVLKFMSHIL MEENIEDKPC  60
MFFDPLGLQV TEKSFYDALG KKYPPSPSKY LPPPCIKGNV ESPDHDAFYR SSSGDTNGST  120
STSTDPQWLG DYIDEYNFSI SQPNLQSINS GSICLENPSN GVTNKSGDGT KLLGSNLLTD  180
GEYLLQFRRG LEEGSKFLPG GNPLVLDFKS SMVSPVWKGQ NHKVEKGEGE SSPDVSRGKK  240
NRGRVDMELE EEEGRSNKQS AIYVEETQES ELLEMFEQTL SDVCNTNEPQ ENMARKALQP  300
TQGAANGGKS SRAKKQSKKT ETVDLNTLLI LCAQAISAGD NETANQLLKQ VRKNSSPLGD  360
GSQRLAHFFA NGLEARLAGT GSGIQLFYTS LVSRKISASE ILSAYKLHLS VCPFKRISLI  420
FTNMMIFKVA EKATTLHVIV FGIGYGLQIA LLIQKLSQRP GGPPKLRITG IELPQPGLRP  480
AERVEETGRR LAKYCEQYNV PFEYHGIASQ KWETIRIEDL KIDRNEMVAV NCLYRFKNLL  540
DETVEVETSP RNAVLKLIRR INPGIFVHSI VNGAYNAPFF VTRFREALFH FSALYDIFDV  600
TVPPGNQLER LMFEREFYGR EAMNVIACEE LQRVERPETY KQWQVRTMRA GFRLLPLDQD  660
LLNGFRSRMK EWYHKDFVLD EDNHWMLQGW KGRIVFACSC WVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-383077031380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823200.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2I4EUY40.0A0A2I4EUY4_JUGRE; scarecrow-like protein 14
STRINGXP_009364376.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]