PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011088-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 333aa    MW: 37135.2 Da    PI: 8.9144
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011088-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.11.1e-2845127383
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssa 82 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk+i+WLl + k+ i++l+ +           ++s++ ++         
  WALNUT_00011088-RA  45 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKAIDWLLDATKHDIDQLPPLpihqgfgqfheQFSHEPNT--------- 126
                         79*************************************************************6666665444422222111......... PP

                 TCP  83 s 83 
                         s
  WALNUT_00011088-RA 127 S 127
                         1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.9646104IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-2746155IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MITKSRDKDV QAKQESPTDY RKCTSSRQWS GSRNPRIVRV SRSFGGKDRH SKVCTIRGLR  60
DRRIRLSVPT AIQLYDLQER LGLSQPSKAI DWLLDATKHD IDQLPPLPIH QGFGQFHEQF  120
SHEPNTSDQY SSVISSFDAN AAFIKEVADK GKWVKTNEED QIQYGIGGQN PAQKLFPTLN  180
HSYSSSLPGL QNNAMAYNSY YNSEPSALSL SQFGSHGLSP SHIDHHSLTS NAIPVQLSSG  240
SQYFFYPSST TLPAVFTPYP SYFSTLIESD PRQINHIQLS SSSSQHVLPH HPGLIPSLHS  300
VGSPLKSFAA NDQNPKLIPQ SHPNNDQNKL EQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1751105155Putative transcription factor PCF6
5zkt_B2e-1751105155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824824.10.0PREDICTED: transcription factor TCP17
RefseqXP_018824825.10.0PREDICTED: transcription factor TCP17
TrEMBLA0A2I4EZK00.0A0A2I4EZK0_JUGRE; transcription factor TCP17
STRINGEOY220941e-103(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5