PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011003-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 320aa    MW: 35974.4 Da    PI: 8.2926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011003-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  WALNUT_00011003-RA 14 KGPWSPEEDSKLKEYIQKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding39.81.1e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  WALNUT_00011003-RA  69 GEFSDEEDRIICALFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.476962IPR017930Myb domain
SuperFamilySSF466892.14E-2711109IPR009057Homeodomain-like
SMARTSM007176.2E-131364IPR001005SANT/Myb domain
PfamPF002496.1E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-251569IPR009057Homeodomain-like
CDDcd001671.08E-91662No hitNo description
PROSITE profilePS5129422.79563117IPR017930Myb domain
SMARTSM007172.4E-1267115IPR001005SANT/Myb domain
PfamPF002494.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2370117IPR009057Homeodomain-like
CDDcd001671.04E-870113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIQ KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC ALFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFMG  120
MHPQSERPFQ SSHQTPPFQT QPLSSSLYKE CSSYYTSTTK SFSGLDPSTS IPPSFLSSST  180
SLATHPSVFQ TQESRASFMQ YYPVKENLLM FGSEGSCSSS DGSCTQISYG RGIKQEVMAF  240
QGYISDGLEE NQKFMLNYGR NGGENVSQWA ETPHAYFGDK VPLECDLEDV KQLVIRSNSG  300
ANNLFNVDES KTAEKVTYFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744721e-116DQ074472.1 Malus x domestica MYB24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858775.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A2I4HRK90.0A0A2I4HRK9_JUGRE; transcription factor RAX2-like
STRINGEOY342871e-141(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-78myb domain protein 36