PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010957-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ZF-HD
Protein Properties Length: 275aa    MW: 30478.6 Da    PI: 8.2591
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010957-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.55.8e-3266122259
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         + vrYkeClkNhAa++Gg+a+DGCgEfmp+ geegt++al+C+AC+CHRnFHR+eve 
  WALNUT_00010957-RA  66 KVVRYKECLKNHAAAMGGNATDGCGEFMPN-GEEGTIEALNCSACNCHRNFHRKEVEG 122
                         679**************************8.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.8E-2968120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2568126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.7E-3169120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08470119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-31203270IPR009057Homeodomain-like
SuperFamilySSF466899.27E-20205269IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-27208264IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MELSSHEGEI PIPINSAYGG GHGHGHMIHH DPAPHNIHIM PSSAPQISSN GPPLPTSLEE  60
HMPYKKVVRY KECLKNHAAA MGGNATDGCG EFMPNGEEGT IEALNCSACN CHRNFHRKEV  120
EGEPSSCDCH HSPHLNRVGR KFIFGHHKNI LPPEALGYPT ATGTFISSRP GAPHQMIMPY  180
NIGSLPSESD EQEDGGGAVV VRPPQLAKKR FRTKFTQEQK EKMLNFAEKV GWKIQKQEEA  240
AVQQFCQEIG VKRRVLKVWM HNNKHNLAKK NHPAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-252092661875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817780.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotO647224e-81ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2I4EEG00.0A0A2I4EEG0_JUGRE; zinc-finger homeodomain protein 4
STRINGVIT_12s0035g01880.t011e-162(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-75homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]