PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010849-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 355aa    MW: 40536.5 Da    PI: 6.1103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010849-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-172774148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
  WALNUT_00010849-RA 27 RGLWSPEEDEKLIKHITTFGHGSWSSVPKLAGLERCGKSCRLRWINYL 74
                        788*******************************************97 PP
2Myb_DNA-binding48.61.8e-1580123146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+  +vd ++ lG++ W+ Ia++++ gRt++++k++w++
  WALNUT_00010849-RA  80 RGSFSAQEERVIVDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 123
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-261877IPR009057Homeodomain-like
PROSITE profilePS5129417.4182274IPR017930Myb domain
SuperFamilySSF466891.01E-2824121IPR009057Homeodomain-like
SMARTSM007175.5E-132676IPR001005SANT/Myb domain
PfamPF002499.1E-152774IPR001005SANT/Myb domain
CDDcd001672.32E-103074No hitNo description
PROSITE profilePS5129424.23575129IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2478130IPR009057Homeodomain-like
SMARTSM007172.3E-1479127IPR001005SANT/Myb domain
PfamPF002491.7E-1380123IPR001005SANT/Myb domain
CDDcd001676.87E-1082122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLRSAFEGAE EPYKMGHHCC SKQKVKRGLW SPEEDEKLIK HITTFGHGSW SSVPKLAGLE  60
RCGKSCRLRW INYLRPDLKR GSFSAQEERV IVDIHRILGN RWAQIAKHLP GRTDNEVKNF  120
WNSCVKKKLI AQGLDPNTHN LLPSHKANNN GCNLSHPKPT SVFFVNSPVK DAASCMDMNI  180
PFSTLLSLLP NDPNISSSHF SHDGPNIPIY EQKNPNIFWT TEEQNPNTSF MDFSMVRFPI  240
SSPPSHPSGF GIVEEDCLWS SSQLQPIELD RQDDHHDEML QPEQQVKKPQ QEIIKAIEVE  300
IDRKADIILT REQNNMDSSF ESSNFGFDFV ESAVTPSDMY CNSYDHGDEF AWEYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30271297108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4997328e-38AB499732.1 Fagus crenata FcMYB179C gene for MYB179C, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824510.10.0PREDICTED: transcription repressor MYB4-like
TrEMBLA0A2I4EYN10.0A0A2I4EYN1_JUGRE; transcription repressor MYB4-like
STRINGXP_010260795.11e-112(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-83myb domain protein 67