PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010825-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 272aa    MW: 29474.6 Da    PI: 6.2483
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010825-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.95.6e-343993155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprlrWt eLHerF++av+qLGG+ekAtPkti+++m+vkgLtl+h+kSHLQkYRl
  WALNUT_00010825-RA 39 KPRLRWTAELHERFIDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 93
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-323694IPR009057Homeodomain-like
PROSITE profilePS5129412.6813696IPR017930Myb domain
TIGRFAMsTIGR015572.9E-243994IPR006447Myb domain, plants
SuperFamilySSF466896.63E-173996IPR009057Homeodomain-like
PfamPF002495.9E-94192IPR001005SANT/Myb domain
PfamPF143793.1E-12129154IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MYSAIHSLPL DVGHGEFQGS LDGTNLPGDA CLVLTSDPKP RLRWTAELHE RFIDAVTQLG  60
GPEKATPKTI MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE SIESSKDASC IAESQDTSAS  120
SSPSSRIMVQ RHLQLRIEAQ GKYLQSILEK ACKALNDQVA ESAAGLEAAR EELSELAIKV  180
SNDCQGLDPL ETMKMPSLSE IAAALDNNNT SNLPARIGDC SVESCLTSTG SPVSPMGMGL  240
KKRPRPLFGN GDSLPLEGNM RQDIEWMMTN MG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241245KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837131.10.0PREDICTED: protein PHR1-LIKE 3-like isoform X2
SwissprotQ94A571e-112PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A2I4FZR40.0A0A2I4FZR4_JUGRE; protein PHR1-LIKE 3-like isoform X2
STRINGXP_002518104.11e-158(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133672126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-95G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]