PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00010824-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27932.9 Da PI: 6.5128 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00031 | 92 | 186 | 13 | 44 |
HHHHHHHHHHHHCTSCC.C.................................................................TTS-STC CS HLH 13 RdriNsafeeLrellPk.as..............................................................kapskKlsK 40 Rd++N+++++L+ +l + + k++++Kl+K WALNUT_00010824-RA 92 RDELNKCLQKLQLHLMEeEVedlfhscdidgsegiqfnefivllcliyllkgpssshttsrlgspqlevtfdtiievflfldKNGDGKLNK 182 89***************777*********************************************************************** PP HHHH CS HLH 41 aeiL 44 ++++ WALNUT_00010824-RA 183 SDMV 186 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.238.10 | 2.8E-31 | 70 | 230 | IPR011992 | EF-hand domain pair |
PROSITE profile | PS50222 | 13.509 | 70 | 105 | IPR002048 | EF-hand domain |
SuperFamily | SSF47473 | 1.59E-31 | 72 | 231 | IPR011992 | EF-hand domain pair |
SMART | SM00054 | 0.0032 | 74 | 102 | IPR002048 | EF-hand domain |
CDD | cd00051 | 3.29E-13 | 75 | 135 | No hit | No description |
PROSITE pattern | PS00018 | 0 | 83 | 95 | IPR018247 | EF-Hand 1, calcium-binding site |
Pfam | PF13833 | 2.9E-9 | 87 | 135 | IPR002048 | EF-hand domain |
PROSITE profile | PS50222 | 9.381 | 106 | 141 | IPR002048 | EF-hand domain |
SMART | SM00054 | 2 | 110 | 138 | IPR002048 | EF-hand domain |
PROSITE profile | PS50222 | 8.879 | 160 | 195 | IPR002048 | EF-hand domain |
Pfam | PF13499 | 9.0E-11 | 163 | 227 | IPR002048 | EF-hand domain |
SMART | SM00054 | 1.2 | 164 | 192 | IPR002048 | EF-hand domain |
CDD | cd00051 | 6.09E-7 | 165 | 224 | No hit | No description |
PROSITE pattern | PS00018 | 0 | 173 | 185 | IPR018247 | EF-Hand 1, calcium-binding site |
PROSITE profile | PS50222 | 10.19 | 198 | 233 | IPR002048 | EF-hand domain |
SMART | SM00054 | 7.2 | 202 | 230 | IPR002048 | EF-hand domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005509 | Molecular Function | calcium ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MKGTPHPWLS LKSLSIKVGS MLCRCRSPNK YKRLDAKLER KMVEAKKGSS GHHNFKSIDS 60 IIMEFPQLRD GLKNIRAVFE QYDEDSSGTI DRDELNKCLQ KLQLHLMEEE VEDLFHSCDI 120 DGSEGIQFNE FIVLLCLIYL LKGPSSSHTT SRLGSPQLEV TFDTIIEVFL FLDKNGDGKL 180 NKSDMVKAFN DPSPREKSPS HIARTRFKEM DWDKNGKVSF REFLFAFINW VGIDTDEEVP 240 HTGT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential calcium sensor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018837124.1 | 1e-180 | PREDICTED: probable calcium-binding protein CML22 isoform X1 | ||||
Swissprot | Q9LRN6 | 8e-87 | CML22_ARATH; Probable calcium-binding protein CML22 | ||||
TrEMBL | A0A2I4FZP4 | 1e-179 | A0A2I4FZP4_JUGRE; probable calcium-binding protein CML22 isoform X1 | ||||
STRING | XP_009374596.1 | 1e-136 | (Pyrus x bretschneideri) |
Publications ? help Back to Top | |||
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