PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010733-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 457aa    MW: 52069.3 Da    PI: 6.0056
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010733-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-18211257148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT++Ed ll+++v ++G++ W+ Iar+++ gR +kqc++rw+++l
  WALNUT_00010733-RA 211 KGQWTPQEDRLLLQLVDRFGTKKWSHIARMLN-GRMGKQCRERWHNHL 257
                         799*****************************.*************97 PP
2Myb_DNA-binding582.2e-18263305145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eEd++l++a+k+ G++ W++Iar+++ gRt++ +k++w+
  WALNUT_00010733-RA 263 KDAWSEEEDKILIEAHKEIGNK-WAAIARRLP-GRTENTIKNHWN 305
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.647206261IPR017930Myb domain
SuperFamilySSF466896.24E-32208304IPR009057Homeodomain-like
SMARTSM007172.6E-17210259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-24212261IPR009057Homeodomain-like
PfamPF139212.0E-18214271No hitNo description
CDDcd001673.83E-15214257No hitNo description
PROSITE profilePS5129421.298262312IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-22262312IPR009057Homeodomain-like
SMARTSM007172.5E-16262310IPR001005SANT/Myb domain
CDDcd001679.15E-13265308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEFDANFRED FPFLSNLFSD NNTPPKPELT DGFSLEPSAS CKGNLFDDLH GHFDHFPLSG  60
SNLNPYDHDG DHFNVEGSTS NPLSGIRECP CTDPCEAYAN AFLNDFTASL FASDSTNGNM  120
QGLESSYLSF WDNPDQKNLV QPTTGGQSHI YLPLNIQEHD GPTNGRFADD ISCITAENEY  180
NRKLAVQKKI RKRAVHMRKA SEVQKKPSII KGQWTPQEDR LLLQLVDRFG TKKWSHIARM  240
LNGRMGKQCR ERWHNHLRPD IRKDAWSEEE DKILIEAHKE IGNKWAAIAR RLPGRTENTI  300
KNHWNATKRR QLSKKNRKDS DSNGSLLQSY IKSVTSASAP RIDKNINMLS ASGKQMVSMM  360
TKPRIDQLES SDHLNSADWA IPVYNDHNYY EAMGLLFDKN MLPETLGFMS MLEEMPCSSL  420
VEESNIEYET PLETDNLVQG EAKKEMDLME LIYQGKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-442073123108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181192RKLAVQKKIRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822991.10.0PREDICTED: transcription factor MYB98-like
TrEMBLA0A2I4EUB70.0A0A2I4EUB7_JUGRE; transcription factor MYB98-like
STRINGEOY024411e-138(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.14e-73myb domain protein 118