PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00010505-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | GeBP | ||||||||
Protein Properties | Length: 404aa MW: 45779.4 Da PI: 4.5709 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 101.8 | 5.9e-32 | 136 | 231 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 ++rlw++eDei lLqG ++ +++g ++d+ fye++ +++++ ++k+ql++K+rrLK+K+++ +k++ +ke+sf+++hdq +fe+s WALNUT_00010505-RA 136 SHRLWTNEDEIQLLQGYLEHPTSRGNiIHHNDTALFYEQIGSKLQVGFNKNQLLDKLRRLKRKYRNALEKINADKEFSFKSAHDQAAFEIS 226 68***********************955566************************************************************ PP DUF573 93 kkiWg 97 +kiWg WALNUT_00010505-RA 227 RKIWG 231 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.4E-30 | 137 | 231 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MLSSFVDWIV FSSSSSSSSS YSSSTSSRYD HEDNDQVIIS AETEDNDEQN DVILDDVATN 60 GDTIPVGIAV TDASAAVTVA VPATEALIHD HPPPITTTII NSRKRRRIDH YDEDDDDILL 120 AAQEEKKHLD DSRRPSHRLW TNEDEIQLLQ GYLEHPTSRG NIIHHNDTAL FYEQIGSKLQ 180 VGFNKNQLLD KLRRLKRKYR NALEKINADK EFSFKSAHDQ AAFEISRKIW GDTRRMDKPG 240 VLEENTLDDG LDQLSPTTLN HLNLVDVKVE NDEVLNDLRL RKRTKSGHAS KNRSISNCRN 300 YGNNNDDVDD NNIDNGNATR LIEDTVGSCL SPWFKELLSN AFCPMPLSGT LQGESTMSLQ 360 GEEQMDENGR EQRILELERY SKQLELVQDQ INVALQELQS NIRE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 106 | RKRRR |
2 | 103 | 107 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018824952.1 | 0.0 | PREDICTED: probable transcription factor At5g28040 | ||||
TrEMBL | A0A2I4EZX5 | 0.0 | A0A2I4EZX5_JUGRE; probable transcription factor At5g28040 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 3e-37 | DNA-binding storekeeper protein-related transcriptional regulator |